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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactctttcttttgctagacactgaagtagaacctcttacatgacatgtttctatagtggtctaatttggatgaaacttggttttaatgcatattcctctgtgatgtcagGTTTCTACTGCTGTTGTAGAGCCTTACAACAGTGTGCTTTCAACGCATTCCCTTCTTGAACATACCGATGTAGCTGTCCTCTTGGATAACGAAGCCATCT

Basic information

species Arabidopsis thaliana
transcript AT5G19780.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152038420|gb|AV822431.2|AV822431
EST:     ATTACGGAAAGAAGTCTAAGCTTGGTTTTACCATATACCCTTCTCCTCAG                         GTTTCTACTGCTGTTG
genomic: ATTACGGAAAGAAGTCTAAGCTTGGTTTTACCATATACCCTTCTCCTCAGgtactctttc ... gtgatgtcagGTTTCTACTGCTGTTG
EST: gi|125252695|gb|EL266780.1|EL266780
EST:     AAGAAGTCTAAGCTTGGTTTTACCATATACCCTTCTCCTCAG                         GTTTCTACTGCTGTTGTAGAGCCTTACAACAGTGTGCTTTCAACGCATTCC
genomic: AAGAAGTCTAAGCTTGGTTTTACCATATACCCTTCTCCTCAGgtactctttc ... gtgatgtcagGTTTCTACTGCTGTTGTAGAGCCTTACAACAGTGTGCTTTCAACGCATTCC
EST: gi|86082984|gb|DR378743.1|DR378743
EST:     ATTACGGAAAGAAGTCTAAACTTGGATTCACCATTTACCCTTCTCCTCAG                         GTTTCTACTGCTGTTGTAGAGCCTTACAACAGTGTTCTGTCAACGCATTCC
genomic: ATTACGGAAAGAAGTCTAAGCTTGGTTTTACCATATACCCTTCTCCTCAGgtactctttc ... gtgatgtcagGTTTCTACTGCTGTTGTAGAGCCTTACAACAGTGTGCTTTCAACGCATTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtggtctaatttggatgaaacttggttttaatgcatattcctctgtgatgtcagGTTTCTACTGCTGTTGTAGAGCCTTACAACAGTGTGCTTTCAACGCATTCCCTTCTTGAACATACCGATGTAGCTGTCCTCTTGGATAACGAAGCCATCT
                          ttttaat  putative branch site (score: 3)
                                      ttcctctgt  putative PPT
                          ttttaatgcatatt  TA-rich tract