1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGGAACTGGTTCTGGATTGGGTTCTCTGTTGCTAGAGCGTTTGTCTGTAGATTACGGAAAGAAGTCTAAGCTTGGTTTTACCATATACCCTTCTCCTCAGgtactctttcttttgctagacactgaagtagaacctcttacatgacatgtttctatagtggtctaatttggatgaaacttggttttaatgcatattcctctgtgatgtcag
species | Arabidopsis thaliana |
transcript | AT5G19780.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATTACGGAAAGAAGTCTAAGCTTGGTTTTACCATATACCCTTCTCCTCAG GTTTCTACTGCTGTTGEST: gi|125252695|gb|EL266780.1|EL266780
genomic: ATTACGGAAAGAAGTCTAAGCTTGGTTTTACCATATACCCTTCTCCTCAGgtactctttc ... gtgatgtcagGTTTCTACTGCTGTTG
EST: AAGAAGTCTAAGCTTGGTTTTACCATATACCCTTCTCCTCAG GTTTCTACTGCTGTTGTAGAGCCTTACAACAGTGTGCTTTCAACGCATTCCEST: gi|86082984|gb|DR378743.1|DR378743
genomic: AAGAAGTCTAAGCTTGGTTTTACCATATACCCTTCTCCTCAGgtactctttc ... gtgatgtcagGTTTCTACTGCTGTTGTAGAGCCTTACAACAGTGTGCTTTCAACGCATTCC
EST: ATTACGGAAAGAAGTCTAAACTTGGATTCACCATTTACCCTTCTCCTCAG GTTTCTACTGCTGTTGTAGAGCCTTACAACAGTGTTCTGTCAACGCATTCC
genomic: ATTACGGAAAGAAGTCTAAGCTTGGTTTTACCATATACCCTTCTCCTCAGgtactctttc ... gtgatgtcagGTTTCTACTGCTGTTGTAGAGCCTTACAACAGTGTGCTTTCAACGCATTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAACTGGTTCTGGATTGGGTTCTCTGTTGCTAGAGCGTTTGTCTGTAGATTACGGAAAGAAGTCTAAGCTTGGTTTTACCATATACCCTTCTCCTCAGgtactctttcttttgctagacactgaagtagaacctcttacatgacatgtttctatagtggtctaatttggatgaaacttggttttaatgcatattcctctgtgatgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC