1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAAGTTCGTACTGGTACTTACCGTCAACTTTTCCATCCAGAGCAGCTCATTTCTGGGAAAGAAGATGCTGCTAACAACTTCGCTAGAGGACATTACACTGgtgagaatccactttctgcttgttctaacttgttagggtttttgaaatggtccttagaatgcttcttgtaattgcag
species | Arabidopsis thaliana |
transcript | AT5G19780.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GACATTACACTG TTGGAAAGGAAATTGTGGATCTATGTCTTGACCGTGTGAGGAAGCTTGCCGEST: gi|116429753|gb|EG472345.1|EG472345
genomic: GACATTACACTGgtgagaatcc ... gtaattgcagTTGGAAAGGAAATTGTGGATCTATGTCTTGACCGTGTGAGGAAGCTTGCCG
EST: TTCTGGGAAAGAAGATGCTGCTAACAACTTCGCTAGAGGACATTACACTG TTGGAAAGGAAATTGTGGATCTATGTCTTGACCGTGTGAGGAAGCTTGCCGEST: gi|152038420|gb|AV822431.2|AV822431
genomic: TTCTGGGAAAGAAGATGCTGCTAACAACTTCGCTAGAGGACATTACACTGgtgagaatcc ... gtaattgcagTTGGAAAGGAAATTGTGGATCTATGTCTTGACCGTGTGAGGAAGCTTGCCG
EST: TTCTGGGAAAGAAGATGCTGCTAACAACTTCGCTAGAGGACATTACACTG TTGGAAAGGAAATTGTGGATCTATGTCTTGACCGTGTGAGGAAGCTTGCCGEST: gi|47828916|gb|CK118600.1|CK118600
genomic: TTCTGGGAAAGAAGATGCTGCTAACAACTTCGCTAGAGGACATTACACTGgtgagaatcc ... gtaattgcagTTGGAAAGGAAATTGTGGATCTATGTCTTGACCGTGTGAGGAAGCTTGCCG
EST: TTCTGGGAAAGAAGATGCTGCTAACAACTTCGCTAGAGGACATTACACTG TTGGAAAGGAAATTGTGGATCTATGTCTTGACCGTGTGAGGAAGCTTGCCGEST: gi|86082984|gb|DR378743.1|DR378743
genomic: TTCTGGGAAAGAAGATGCTGCTAACAACTTCGCTAGAGGACATTACACTGgtgagaatcc ... gtaattgcagTTGGAAAGGAAATTGTGGATCTATGTCTTGACCGTGTGAGGAAGCTTGCCG
EST: CTCTGGGAAAGAAGATGCTGCTAACAACTTCGCTAGAGGACATTACACTG TTGGAAAGGAAATTGTGGATCTATGTCTTGACCGTGTGAGGAAGCTTGCCG
genomic: TTCTGGGAAAGAAGATGCTGCTAACAACTTCGCTAGAGGACATTACACTGgtgagaatcc ... gtaattgcagTTGGAAAGGAAATTGTGGATCTATGTCTTGACCGTGTGAGGAAGCTTGCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGTTCGTACTGGTACTTACCGTCAACTTTTCCATCCAGAGCAGCTCATTTCTGGGAAAGAAGATGCTGCTAACAACTTCGCTAGAGGACATTACACTGgtgagaatccactttctgcttgttctaacttgttagggtttttgaaatggtccttagaatgcttcttgtaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA