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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCGAAGCACCCATCGGGTAAAAACAGGACTACTAGAGATGAGTTAGTTGACACATATATCTGGCTTCCTTGTGCGTTAGGAAACTCCACGAGGACAAGgtaagtgacaatatgtgtatgatttttggaagaaagatattagttcgattagaatcactgaatcacatcatatgatgatccttcatacttgtcacttaccttatcttaattttgaattctctcggtggacaatgaataatttttgcataacgtgcag

Basic information

species Arabidopsis thaliana
transcript AT5G17100.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116485309|gb|EG527901.1|EG527901
EST:     GACACATATATCTGGCTTCCTTGTGCGTTAGGAAACTCCACGAGGACAAG                         TGAACATATATACTTACAGGCATTATCATCTCAGCCAACTTCATTTCTCCG
genomic: GACACATATATCTGGCTTCCTTGTGCGTTAGGAAACTCCACGAGGACAAGgtaagtgaca ... taacgtgcagTGAACATATATACTTACAGGCATTATCATCTCAGCCAACTTCATTTCTCCG
EST: gi|116485302|gb|EG527894.1|EG527894
EST:     GACACATATATCTGGCTTCCTTGTGCGTTAGGAAACTCCACGAGGACAAG                         TGAACATATATACTTACAGGCATTATCATTTCAGCCAACTTCATTTTTCCG
genomic: GACACATATATCTGGCTTCCTTGTGCGTTAGGAAACTCCACGAGGACAAGgtaagtgaca ... taacgtgcagTGAACATATATACTTACAGGCATTATCATCTCAGCCAACTTCATTTCTCCG
EST: gi|116485300|gb|EG527892.1|EG527892
EST:     GACACATATATCTGGCTTCCTTGTGCGTTAGGAAACTCCACGAGGACAAG                         TGAACATATATACTTACAGGCATTATCATTTCAGCCAACTTCATTTTTCCG
genomic: GACACATATATCTGGCTTCCTTGTGCGTTAGGAAACTCCACGAGGACAAGgtaagtgaca ... taacgtgcagTGAACATATATACTTACAGGCATTATCATCTCAGCCAACTTCATTTCTCCG