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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcatatatgtataagtagtcttctttgttgtttaccgagtcaaactctgggcggattattgtctgtttattgtcttgtaacttataatctttctgcctaacttgtagACTGTATGTATCGTTGACGCTAGGGAAGG

Basic information

species Arabidopsis thaliana
transcript AT5G17100.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116485309|gb|EG527901.1|EG527901
EST:     TCTGCAGGCCAAGTCCTAAACCAGGAACCGAAATCTATATTAATTTAAAG                         ACTGTATGTATCGTTGACGCTAGGGAAGG
genomic: TCTGCAGGCCAAGTCCTAAACCAGGAACCGAAATCTATATTAATTTAAAGgtgcatatat ... taacttgtagACTGTATGTATCGTTGACGCTAGGGAAGG
EST: gi|116485302|gb|EG527894.1|EG527894
EST:     TTTGCAGGCCAAGTCCTAAACCAGGAACCGAAATCTATATTAATTTAAAG                         ACTGTATGTATCGTTGACGCTAGGGAAGG
genomic: TCTGCAGGCCAAGTCCTAAACCAGGAACCGAAATCTATATTAATTTAAAGgtgcatatat ... taacttgtagACTGTATGTATCGTTGACGCTAGGGAAGG
EST: gi|116485300|gb|EG527892.1|EG527892
EST:     TTTGCAGGCCAAGTCCTAAACCAGGAACCGAAATCTATATTAATTTAAAG                         ACTGTATGTATCGTTGACGCTAGGGAAGG
genomic: TCTGCAGGCCAAGTCCTAAACCAGGAACCGAAATCTATATTAATTTAAAGgtgcatatat ... taacttgtagACTGTATGTATCGTTGACGCTAGGGAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggattattgtctgtttattgtcttgtaacttataatctttctgcctaacttgtagACTGTATGTATCGTTGACGCTAGGGAAGG
                                          gcctaac  putative branch site (score: 2)
                                   tctttctgcct  CT-rich tract
                         taacttataatcttt  TA-rich tract