1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caccaatagatttgtctatgcctgtctagttagttgtcgaagttggcttttattaaatcagtaaataaatatgaaaacaaatctcttttgtatgttttagGGTTTTCTTCCTGATACCTTGAACGGAATCGACGATGTTGATCTAGACGGTAAAATGGATGGCTACAACAGTACTAGGGATTTCATGGCAGAGCTTGCTA
species | Arabidopsis thaliana |
transcript | AT5G17100.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCATTATGACGAATACTACAATGACAGGCTCGAGGCTTTCAAGAGTAAG GGTTTTCTTCCTGATACCTTGAACGGAATCGACGATGTTGAEST: gi|116437360|gb|EG479952.1|EG479952
genomic: AACATTATGACGAATACTACAATGACAGGCTCGAGGCTTTCAAGAGTAAGgtataatcaa ... tatgttttagGGTTTTCTTCCTGATACCTTGAACGGAATCGACGATGTTGA
EST: AACATTATGACGAATACTACAATGACAGGCTCGAGGCTTTCAAGAGTAAG GGTTTTCTTCCTGATACCTTGAACGGAATCGACGATGTTGAEST: gi|116437374|gb|EG479966.1|EG479966
genomic: AACATTATGACGAATACTACAATGACAGGCTCGAGGCTTTCAAGAGTAAGgtataatcaa ... tatgttttagGGTTTTCTTCCTGATACCTTGAACGGAATCGACGATGTTGA
EST: AACATTATGACGAATACTACAATGACAGGCTCGAGGCTTTCAAGAGTAAG GGTTTTCTTCCTGATACCTTGAACGGAATCGACGATGTTGAEST: gi|116437375|gb|EG479967.1|EG479967
genomic: AACATTATGACGAATACTACAATGACAGGCTCGAGGCTTTCAAGAGTAAGgtataatcaa ... tatgttttagGGTTTTCTTCCTGATACCTTGAACGGAATCGACGATGTTGA
EST: AACATTATGACGAATACTACAATGACAGGCTCGAGACTTTCAAGGGTAAG GGTTTTCTTCCTGATACCTTGAACGGAATCGACGATGTTGAEST: gi|116437378|gb|EG479970.1|EG479970
genomic: AACATTATGACGAATACTACAATGACAGGCTCGAGGCTTTCAAGAGTAAGgtataatcaa ... tatgttttagGGTTTTCTTCCTGATACCTTGAACGGAATCGACGATGTTGA
EST: AACATTATGACGAATACTACAATGACAGACTCGAGGCTTTCAAGAGTAAG GGTTTTCTTCCTGATACCTTGAACGGAATCGACGATGTTGAEST: gi|116437371|gb|EG479963.1|EG479963
genomic: AACATTATGACGAATACTACAATGACAGGCTCGAGGCTTTCAAGAGTAAGgtataatcaa ... tatgttttagGGTTTTCTTCCTGATACCTTGAACGGAATCGACGATGTTGA
EST: AACATTATGACGAATACTACAATGACAGGCTCGAGGCTTTCAAGAGTAAG GGTTTTCTTCCTGATACCTTGAACGGAATCGACGATGTTGAEST: gi|116437369|gb|EG479961.1|EG479961
genomic: AACATTATGACGAATACTACAATGACAGGCTCGAGGCTTTCAAGAGTAAGgtataatcaa ... tatgttttagGGTTTTCTTCCTGATACCTTGAACGGAATCGACGATGTTGA
EST: AACATTATGACGAATACTACAATGACAGGCTCGAGGCTTTCAAGAGTAAG GGTTTTCTTCCTGATACCTTGAACGGAATCGACGATGTTGAEST: gi|116437357|gb|EG479949.1|EG479949
genomic: AACATTATGACGAATACTACAATGACAGGCTCGAGGCTTTCAAGAGTAAGgtataatcaa ... tatgttttagGGTTTTCTTCCTGATACCTTGAACGGAATCGACGATGTTGA
EST: AACATTATGACGAATACTACAATGACAGGCTCGAGGCTTTCAAGAGTAAG GGTTTTCTTCCTGATACCTTGAACGGAATCGACGATGTTGAEST: gi|116437362|gb|EG479954.1|EG479954
genomic: AACATTATGACGAATACTACAATGACAGGCTCGAGGCTTTCAAGAGTAAGgtataatcaa ... tatgttttagGGTTTTCTTCCTGATACCTTGAACGGAATCGACGATGTTGA
EST: AACATTATGACGAATACTACAATGACAGGCTCGAGGCTTTCAAGAGTAAG GGTTTTCTTCCTGATACCTTGAACGGAATCGACGATGTTGAEST: gi|116437377|gb|EG479969.1|EG479969
genomic: AACATTATGACGAATACTACAATGACAGGCTCGAGGCTTTCAAGAGTAAGgtataatcaa ... tatgttttagGGTTTTCTTCCTGATACCTTGAACGGAATCGACGATGTTGA
EST: AACATTATGACGAATACTACAATGACAGGCTCGAGGCTTTCAAGAGTAAG GGTTTTCTTCCTGATACCTTGAACGGAATCGACGATGTTGA
genomic: AACATTATGACGAATACTACAATGACAGGCTCGAGGCTTTCAAGAGTAAGgtataatcaa ... tatgttttagGGTTTTCTTCCTGATACCTTGAACGGAATCGACGATGTTGA
gcttttattaaatcagtaaataaatatgaaaacaaatctcttttgtatgttttagGGTTTTCTTCCTGATACCTTGAACGGAATCGACGATGTTGATCTAGACGGTAAAATGGATGGCTACAACAGTACTAGGGATTTCATGGCAGAGCTTGCTA
tctcttttgt CT-rich tract
tattaaatcagtaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caccaatagatttgtctatgcctgtctagttagttgtcgaagttggcttttattaaatcagtaaataaatatgaaaacaaatctcttttgtatgttttagGGTTTTCTTCCTGATACCTTGAACGGAATCGACGATGTTGATCTAGACGGTAAAATGGATGGCTACAACAGTACTAGGGATTTCATGGCAGAGCTTGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
caccaat
- - - - gatttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - -taaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa