1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagtgagaagttttgttttgtttttttcttaagatatgaattttggtttttggatttatttttgagttttatatatttttcacagGGAACGACTTTAGAGTTGGTAAATGTTGCGAGAGTTACTGCAAGGGGAGCAGCTACATGGAGGTTGTACATCACTTTTATGGCTCGAGAGTTTTCTGATG
species | Arabidopsis thaliana |
transcript | AT5G17100.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCATGGCAGAGCTTGCTAATGTGTGTGTTAAGAAACACAACGAGACCAAG GGAACGACTTTAGAGTTGGTAAATGTTGCGAGAGTTACTGCAAGGGGAGCAEST: gi|164236139|gb|ES160786.1|ES160786
genomic: TCATGGCAGAGCTTGCTAATGTGTGTGTTAAGAAACACAACGAGACCAAGgtgagtgaga ... tttttcacagGGAACGACTTTAGAGTTGGTAAATGTTGCGAGAGTTACTGCAAGGGGAGCA
EST: GCTAATGTGTGTGTTAAGAAACACAACGAGACCAAG GGAACGACTTTAGAGTTGGTAAATGTTGCGAGAGTTACTGAAAGGGGAGCAEST: gi|116485302|gb|EG527894.1|EG527894
genomic: GCTAATGTGTGTGTTAAGAAACACAACGAGACCAAGgtgagtgaga ... tttttcacagGGAACGACTTTAGAGTTGGTAAATGTTGCGAGAGTTACTGCAAGGGGAGCA
EST: TCATGGCAGAGCTTGCTAATGTGTGTGTTAAGAAACACAACGAGACCAAG GGAACGACTTTAGAGTTGGTAAATGTTGCGAGAGTTACTGCAAGGGGAGCAEST: gi|116485300|gb|EG527892.1|EG527892
genomic: TCATGGCAGAGCTTGCTAATGTGTGTGTTAAGAAACACAACGAGACCAAGgtgagtgaga ... tttttcacagGGAACGACTTTAGAGTTGGTAAATGTTGCGAGAGTTACTGCAAGGGGAGCA
EST: TCATGGCAGAGCTTGCTAATGTGTGTGTTAAGAAACACAACGAGACCAAG GGAACGACTTTAGAGTTGGTAAATGTTGCGAGAGTTACTGCAAGGGGAGCA
genomic: TCATGGCAGAGCTTGCTAATGTGTGTGTTAAGAAACACAACGAGACCAAGgtgagtgaga ... tttttcacagGGAACGACTTTAGAGTTGGTAAATGTTGCGAGAGTTACTGCAAGGGGAGCA
aagatatgaattttggtttttggatttatttttgagttttatatatttttcacagGGAACGACTTTAGAGTTGGTAAATGTTGCGAGAGTTACTGCAAGGGGAGCAGCTACATGGAGGTTGTACATCACTTTTATGGCTCGAGAGTTTTCTGATG
tatttttc CT-rich tract
tttttggatttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgagaagttttgttttgtttttttcttaagatatgaattttggtttttggatttatttttgagttttatatatttttcacagGGAACGACTTTAGAGTTGGTAAATGTTGCGAGAGTTACTGCAAGGGGAGCAGCTACATGGAGGTTGTACATCACTTTTATGGCTCGAGAGTTTTCTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG