1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGCCAAGGTAATAGTCTTCTTAGGGGATGAGGAACGTCCTGTCCCAGTTCTCTGCAGGCCAAGTCCTAAACCAGGAACCGAAATCTATATTAATTTAAAGgtgcatatatgtataagtagtcttctttgttgtttaccgagtcaaactctgggcggattattgtctgtttattgtcttgtaacttataatctttctgcctaacttgtag
species | Arabidopsis thaliana |
transcript | AT5G17100.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCTGCAGGCCAAGTCCTAAACCAGGAACCGAAATCTATATTAATTTAAAG ACTGTATGTATCGTTGACGCTAGGGAAGGEST: gi|116485302|gb|EG527894.1|EG527894
genomic: TCTGCAGGCCAAGTCCTAAACCAGGAACCGAAATCTATATTAATTTAAAGgtgcatatat ... taacttgtagACTGTATGTATCGTTGACGCTAGGGAAGG
EST: TTTGCAGGCCAAGTCCTAAACCAGGAACCGAAATCTATATTAATTTAAAG ACTGTATGTATCGTTGACGCTAGGGAAGGEST: gi|116485300|gb|EG527892.1|EG527892
genomic: TCTGCAGGCCAAGTCCTAAACCAGGAACCGAAATCTATATTAATTTAAAGgtgcatatat ... taacttgtagACTGTATGTATCGTTGACGCTAGGGAAGG
EST: TTTGCAGGCCAAGTCCTAAACCAGGAACCGAAATCTATATTAATTTAAAG ACTGTATGTATCGTTGACGCTAGGGAAGG
genomic: TCTGCAGGCCAAGTCCTAAACCAGGAACCGAAATCTATATTAATTTAAAGgtgcatatat ... taacttgtagACTGTATGTATCGTTGACGCTAGGGAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCCAAGGTAATAGTCTTCTTAGGGGATGAGGAACGTCCTGTCCCAGTTCTCTGCAGGCCAAGTCCTAAACCAGGAACCGAAATCTATATTAATTTAAAGgtgcatatatgtataagtagtcttctttgttgtttaccgagtcaaactctgggcggattattgtctgtttattgtcttgtaacttataatctttctgcctaacttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG