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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATATCTCTACTTAAATCTGGTCAAAGAGATAATCTCAAATGGAAACTTAAAAGACGATAGGACAGGGACTGGTACATTATCTAAATTTGGTTGTCAGgtgagttactacttcataatatgtatctgaatgtcttgttctggtttgcttatcaaaagttaacaaatttccatatctttggatccacag

Basic information

species Arabidopsis thaliana
transcript AT4G34570.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34570.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA04G01240.1 (Glycine max), 5'ss of exon 2
GGAATATCTCTACTTAAATCTGGTCAAAGAGATAATCTCAAATGGAAACTTAAAAGACGATAGGACAGGGACTGGTACATTATCTAAATTTGGTTGTCAGgtgagttactacttcataatatgtatctgaatgtcttgttctggtttgcttatcaaaa--gttaacaaatttccatatctttggatccacag
||| ||||| ||  | || |||||  |||| || ||  |  | || |     || || |||||||||||||||||||| || || ||||||||||| ||||| |  |  |   |   |||  | || | || |  ||| | | ||||   |    |    ||    | ||||||| |               
GGAGTATCTATATCTTAAGCTGGTTCAAGACATCATTGCTGAAGGTACAACTAAGGATGATAGGACAGGGACTGGTACCTTGTCAAAATTTGGTTGCCAGgtaacgttttgactttcaattgggatattaaggg-ttgctatagtttatatgctgactttgtctctatatttccacag--------------

upper sequence: AT4G34570.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA06G01280.1 (Glycine max), 5'ss of exon 3
GGAATATCTCTACTTAAATCTGGTCAAAGAGATAATCTCAAATGGAAACTTAAAAGACGATAGGACAGGGACTGGTACATTATCTAAATTTGGTTGTCAGgtgagttactacttcataatatgtatctgaatgtcttgttctggtttgcttatcaaaagttaacaaatttccatatctttggatccacag
||| ||||| ||  | || |||||  | || || ||  |  | || |     || |  |||||||||||||||||||| || || ||||||||||| ||||| |  |   |  |   |||  | || | || |  ||| | | ||||   |    |   |       | || |||| |    |       
GGAGTATCTGTATCTTAAGCTGGTTCAGGACATCATTGCTGAAGGTACAACTAAGGGTGATAGGACAGGGACTGGTACCTTGTCAAAATTTGGTTGCCAGgtaacatttcaactttcaattgggatattaaggg-ttgctgtagtttatatgctgacttt------gtctctatatttgcacag------

upper sequence: AT4G34570.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv03s0038g04500.t01 (Vitis vinifera), 5'ss of exon 4
GGAATATCTCTACTTAAATCTGGTCAAAGAGATAATCTCAAATGGAAACTTAAAAGACGATAGGACAGGGACTGGTACATTATCTAAATTTGGTTGTCAGgtga-gttactacttcataat--------------atgta-----tctgaatgtcttgttc-------tggtttgcttatcaaaagttaacaaatttccatatc--tttggatccacag
||||||  ||||  | |   ||||  |||| || |||||||||||      ||  || |||||||||||||||||||| ||||| || |||||||| |||||   | || |     |||||              ||||      ||||||||| |  |||       ||||||  |  ||||   || || | | |    |||  |||  || |||||
GGAATACATCTATCTGAGATTGGTTGAAGACATCATCTCAAATGGTGTTCAAAGGGATGATAGGACAGGGACTGGTACTTTATCAAAGTTTGGTTGCCAGgtactgctaatttcagataattgagagagttggtcatgttcctcttctgaatgtatgtttccattatatggttttatattcaactattgaccagtgtagtaatcaatttttattcacag