1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...acttatccccttatttcacactttgatatgagtttggtcttgagcgttttgtctttgaaattctgtaattctcgtctgaagttttggtttttctttttagGTGTTTGCAAAACTCCGCAAAGACTCTACCTTTAGCGTTTAAATCG
species | Arabidopsis thaliana |
transcript | AT4G34570.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTCACTCTGAATGGGGATTGAATTTGGTGAACTCCAATGAG GTGTTTGCAAAACTCCGCAAAGACTCTACCTTTAGCGTTTAAATCGEST: gi|116452427|gb|EG495019.1|EG495019
genomic: ATTCACTCTGAATGGGGATTGAATTTGGTGAACTCCAATGAGgttagttatg ... ttctttttagGTGTTTGCAAAACTCCGCAAAGACTCTACCTTTAGCGTTTAAATCG
EST: ATTCACTCTGAATGGGGATTGAATTTGGTGAACTCCAATGAG GTGTTTGCAAAACTCCGCAAAGACTCTACCTTTAGCGTTTAAATCG
genomic: ATTCACTCTGAATGGGGATTGAATTTGGTGAACTCCAATGAGgttagttatg ... ttctttttagGTGTTTGCAAAACTCCGCAAAGACTCTACCTTTAGCGTTTAAATCG
gttttgtctttgaaattctgtaattctcgtctgaagttttggtttttctttttagGTGTTTGCAAAACTCCGCAAAGACTCTACCTTTAGCGTTTAAATCG
ttttggtttttctttt CT-rich tract
tttttcttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttatccccttatttcacactttgatatgagtttggtcttgagcgttttgtctttgaaattctgtaattctcgtctgaagttttggtttttctttttagGTGTTTGCAAAACTCCGCAAAGACTCTACCTTTAGCGTTTAAATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
-cttatcc
- - - - - - - ttcacac
- - - - - - - - - - - - - - - agtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttttgg