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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGTCAAATGTATCAGCGTTCAGCCGATATGGGTCTCGGCGTACCGTTTAACATTGCCTCATACTCCCTTCTTACATGCATTCTTGCTCACGTCTGCGgtaaagttctaattcccactataaaaggagcaaatttgtgatttcaaatatcagtcatcgtctgatagtttgttgacattatgcag

Basic information

species Arabidopsis thaliana
transcript AT4G34570.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34570.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv18s0001g12940.t01 (Vitis vinifera), 5'ss of exon 8
TCATGTCAAATGTATCAGCGTTCAGCCGATATGGGTCTCGGCGTACCGTTTAACATTGCCTCATACTCCCTTCTTACATGCATTCTTGCTCACGTCTGCGgtaaagttctaattcccactataaaaggagcaaatttgtgatttcaaatatc-agtcatcgtctg---atagtttgttgacatt---atgcag-----------------------------------------------------------------------
|| ||||||||||||||||| || || ||||||||||| || || || ||||||||||| || ||  |  |  | ||||||||  ||||||| || || ||||  ||  | ||| | ||||| | |     ||  ||   | |   |  ||| ||| ||  | |    ||||||   |  ||||    | | |                                                                       
TCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGACATGCATGATTGCTCATGTTTGTGgtat-gtatttatttctactatgagaatgtaaacctttgaaataagaggatctagttataatttctccatagttctatttcatttctgtcctggcattggcatcatgagttatcaatcatctacacccttttaaaaatccctctacattaatttgcctgtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19741045|gb|AU226398.1|AU226398
EST:     TAACATTGCCTCATACTCCCTTCTTACATGCATTCTTGCTCACGTCTGCG                         ATCTTGTTCCTGGTGATTTTATCCATGTGATTGGAGATGCTCATGTTTACA
genomic: TAACATTGCCTCATACTCCCTTCTTACATGCATTCTTGCTCACGTCTGCGgtaaagttct ... cattatgcagATCTTGTTCCTGGTGATTTTATCCATGTGATTGGAGATGCTCATGTTTACA
EST: gi|124880789|gb|EH959691.1|EH959691
EST:     TAACATTGCCTCATACTCCCTTCTTACATGCATTCTTGCTCACGTCTGCG                         ATCTTGTTCCTGGTGATTTTA
genomic: TAACATTGCCTCATACTCCCTTCTTACATGCATTCTTGCTCACGTCTGCGgtaaagttct ... cattatgcagATCTTGTTCCTGGTGATTTTA