Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGCAGTAGCATAGATTCTGCTCTAGACTTATTAGCTGCACCTCCGTTTAGTCTGTCCATTGAGAAAGTGTTTGTAATAGGAGGTGGCGACATATTGAGgtgtgtgttctatagtcaagactctcccttttttcgtgattttaattctctttgatcgtgttatgtttgttgtattgtag

Basic information

species Arabidopsis thaliana
transcript AT4G34570.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34570.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv03s0038g04500.t01 (Vitis vinifera), 5'ss of exon 3
CTTGCAGTAGCATAGATTCTGCTCTAGACTTATTAGCTGCACCTCCGTTTAGTCTGTCCATTGAGAAAGTGTTTGTAATAGGAGGTGGCGACATATTGAGgtgtgtgttctatagtcaagactctcccttttttcgtgattttaattctctttgatcgtgttatgtttgttgtattgtag
  ||  | ||||| | ||||||| | ||  ||||||||||| |||| | | ||||||||||||| ||||||||||| |||||||||||| | ||| | ||||||||  | | | |   |     | |  | ||  |    |||     ||||| |     |||| |||    ||  |   
TATGTGGAAGCATGGCTTCTGCTTTGGAACTATTAGCTGCATCTCCCTATTGTCTGTCCATTGAAAAAGTGTTTGTTATAGGAGGTGGCCAGATACTAAGgtgtgtactttgttgatca----ttgctgtattaaggagctttttcgttctttcagttgattatcttttcaatacag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116452427|gb|EG495019.1|EG495019
EST:     AGTCTGTCCATTGAGAAAGTGTTTGTAATAGGAGGTGGCGACATATTGAG                         GGAAGCTTTGAATAAACCGAGCTGTGAAGCCATCCACATAACTGAGATTGA
genomic: AGTCTGTCCATTGAGAAAGTGTTTGTAATAGGAGGTGGCGACATATTGAGgtgtgtgttc ... tgtattgtagGGAAGCTTTGAATAAACCGAGCTGTGAAGCCATCCACATAACTGAGATTGA