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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTCAGTGTGACTCAGTCGCCGTCGTCTCCCGCCGTTTATACCCTCTCCGAAGCCCCGAGCGGCCAAGACGCTACGTTTGATTTCGTCTCAAGgttagggttttggaatctcagttttttttttgtaaaaaaacaatatgaatgctgaatttgtttctgtcgattttgcctctgtttgcaatcatgaatgcgtag

Basic information

species Arabidopsis thaliana
transcript AT4G34570.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19874829|gb|AU235660.1|AU235660
EST:     CTCTCCGAAGCCCCGAGCGGCCAAGACGCTACGTTTGATTTCGTCTCAAG                         ATTCACTCTGAATGGGGATTGAATTTGGTGAACTCCAATGAG
genomic: CTCTCCGAAGCCCCGAGCGGCCAAGACGCTACGTTTGATTTCGTCTCAAGgttagggttt ... gaatgcgtagATTCACTCTGAATGGGGATTGAATTTGGTGAACTCCAATGAG
EST: gi|116452427|gb|EG495019.1|EG495019
EST:     CTCTCCGAAGCCCCGAGCGGCCAAGACGCTACGTTTGATTTCGTCTCAAG                         ATTCACTCTGAATGGGGATTGAATTTGGTGAACTCCAATGAG
genomic: CTCTCCGAAGCCCCGAGCGGCCAAGACGCTACGTTTGATTTCGTCTCAAGgttagggttt ... gaatgcgtagATTCACTCTGAATGGGGATTGAATTTGGTGAACTCCAATGAG