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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCCAAGTTTGTTTGACTTTCTAAAGAGAAATAAATACTCCGCATTTCCTCTGGCCCTTGTTCGGGATTTTGGATGCCAGCTTTTGGAATCTGTAGCATgtctgtgaattgttcctatctgctgctattttatacaattatcgtacctagcacgtcacctttatgtcccggttcagcagctgtagttcctacctaatgcctctctgttcttaacataatcttccttgtctacag

Basic information

species Arabidopsis thaliana
transcript AT4G32660.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G32660.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA06G08480.2 (Glycine max), 5'ss of exon 5
GGGCCAAGTTTGTTTGACTTTCTAAAGAGAAATAAATACTCCGCATTTCCTCTGGCCCTTGTTCGGGATTTTGGATGCCAGCTTTTGGAATCTGTAGCATgtctgtgaattgttcctatctgctgctattttatacaattatcgtacctagcacgtcacctttatgtcccggttcagcagctgtagttcctacctaatgcctctctgttctta-acataatcttccttgtctacag-----------------------------------------
|| ||||| || ||||| |||||||||||||||||||||| | |||| ||| |||  ||||||||||| |||||| | ||||||||||||||||||||||||||||| ||| ||| |  |      | | ||   ||  | || | | ||   | ||    |||          ||   ||| |        |||  |   ||| ||| |    |   | | |  ||||  |                                             
GGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGGGAATTTGGACGTCAGCTTTTGGAATCTGTAGCATgtctgtggattattcttggccttcagtttatttctcatgtttcattcttaagtc-tcttgcttacaaattaaacca-tggctttttccttggcctgct--ttctttgtccagggatgcagtgtatcttggttgtgtctgcttactttaacttctttcttgttctttatcatattcag

upper sequence: AT4G32660.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv04s0008g04220.t01 (Vitis vinifera), 5'ss of exon 6
GGGCCAAGTTTGTTTGACTTTCTAAAGAGAAATAAATACTCCGCATTTCCTCTGGCCCTTGTTCGGGATTTTGGATGCCAGCTTTTGGAATCTGTAGCATgtctgtgaattgttcctatctgctgct---------attttataca--attatcgtacctagcacgtcacc---------tttatgtcccggttcagc--------agctgtagttcctaccta-----atgcctctctgttcttaacataatcttccttg-tctacag----------
|| |||||||| ||||| |||||||||||||||||||||| | |||||||| |||  ||||||||||| |||||| | |||||||||||||||||||||||| |||| ||||| | |  |   ||||         ||| | ||    ||| ||  ||||| |   | |||         ||| ||  || |||  |           |||||  ||     ||      || |  | |  | ||||||| || ||||||| | ||||           
GGACCAAGTTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTTCCTGTGGATCTTGTTCGGGAATTTGGACGTCAGCTTTTGGAATCTGTAGCATgtgtgtgcattgtccttggcccttgctttatctctcattctgtattttattttctaacctaaccaattacccagatctgttttttgggcctgttttgtttgtccaggactgtacctctgtattatgtttgtgtcctttttgttttaacatgattttccttgctttacaatatccaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116384701|gb|EG427293.1|EG427293
EST:     TCTGGCCCTTGTTCGGGATTTTGGATGCCAGCTTTTGGAATCTGTAGCAT                         ATATGCACGAGTTACAGTTAGTTCACACCAACCTCAAGCCTGAGAACATTC
genomic: TCTGGCCCTTGTTCGGGATTTTGGATGCCAGCTTTTGGAATCTGTAGCATgtctgtgaat ... ttgtctacagATATGCACGAGTTACAGTTAGTTCACACCGACCTCAAGCCTGAGAACATTC