1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CGCGTCGGTGATGATAGCTAACGGATTCGAGAGTATGGATAAAGAACGAGTCAGGAAACGTCCTCGTATGACCTGGGACGAGGCCCCAGCTGAACCAGAGgttgctcctctttcttcttcttctttttttaattaatctttgacatttagaacttcgaattagggtttagaatgtggaggaaagaccgagcatttatgtttctttggtgagattttgatatgctgacaatgaatgaattttgacttttttgtgatag
species | Arabidopsis thaliana |
transcript | AT4G32660.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCAGGAAACGTCCTCGTATGACCTGGGACGAGGCCCCAGCTGAACCAGAG GCTAAAAGGGCTGTGATTAAAGGACATGGAAGCGATGGGAGGATTTTGTCAEST: gi|116384701|gb|EG427293.1|EG427293
genomic: TCAGGAAACGTCCTCGTATGACCTGGGACGAGGCCCCAGCTGAACCAGAGgttgctcctc ... tttgtgatagGCTAAAAGGGCTGTGATTAAAGGACATGGAAGCGATGGGAGGATTTTGTCA
EST: TCAGGAAACGTCCTCGTATGACCTGGGACGAGGCCCCAGCTGAACCAGAG GCTAAAAGGGCTGTGATTAAAGGACACGGAGGCGATGGGAGGATTTTGTCAEST: gi|86068359|gb|DR364116.1|DR364116
genomic: TCAGGAAACGTCCTCGTATGACCTGGGACGAGGCCCCAGCTGAACCAGAGgttgctcctc ... tttgtgatagGCTAAAAGGGCTGTGATTAAAGGACATGGAAGCGATGGGAGGATTTTGTCA
EST: TCAGGAAACGTNCTCGTATGACCTGGGACGAGGCCCCAGCTGAACCAGAG GCTAAAAGGGCTGTGATTAAAGGACATGGAAGCGATGGGAGGATTTTGTCA
genomic: TCAGGAAACGTCCTCGTATGACCTGGGACGAGGCCCCAGCTGAACCAGAGgttgctcctc ... tttgtgatagGCTAAAAGGGCTGTGATTAAAGGACATGGAAGCGATGGGAGGATTTTGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCGTCGGTGATGATAGCTAACGGATTCGAGAGTATGGATAAAGAACGAGTCAGGAAACGTCCTCGTATGACCTGGGACGAGGCCCCAGCTGAACCAGAGgttgctcctctttcttcttcttctttttttaattaatctttgacatttagaacttcgaattagggtttagaatgtggaggaaagaccgagcatttatgtttctttggtgagattttgatatgctgacaatgaatgaattttgacttttttgtgatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA