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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACATGGAAGCGATGGGAGGATTTTGTCACCACCATTAAGGGACGATGATCGTGATGGTCATTATGTTTTCAGTTTGAGGGACAATCTCACTCCTAGATgtgagtttttgatggataaagttgctaactttctattctatgtgagctaagatatttacctatgttgcttctatatgtgtattgttgctagtaactcttt...

Basic information

species Arabidopsis thaliana
transcript AT4G32660.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876903|gb|AU237734.1|AU237734
EST:     TCGTGATGGGCATTATGTTTTCAGNTTGAGGGACAATCTCACTCCTAGAT                         ATAAAAATACTTANCAAGATGGGTGAAGGCACATTT
genomic: TCGTGATGGTCATTATGTTTTCAGTTTGAGGGACAATCTCACTCCTAGATgtgagttttt ... cttttgacagATAAAA-TACTTAGCAAGATGGGTGAAGGCACATTT
EST: gi|116384701|gb|EG427293.1|EG427293
EST:     TCGTGATGGTCATTATGTTTTCAGTTTGAGGGACAATCTCACTCCTAGAT                         ATAAAATACTTAGCAAGATGGGTGAAG
genomic: TCGTGATGGTCATTATGTTTTCAGTTTGAGGGACAATCTCACTCCTAGATgtgagttttt ... cttttgacagATAAAATACTTAGCAAGATGGGTGAAG