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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttaatcaccattaattcttgttagtgtctaatgatatatcttttgtttaatatgccgtaatctgaagtagaaactgcttacaattcttgcagGATATGGTATCGAAACATGTTGACAACACGAGATCTAGATTTGCAGATCTATTGTATGGTTTATTGGCATATGATCCATCTGAGCGTCTCACAGCAAACG

Basic information

species Arabidopsis thaliana
transcript AT4G32660.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86087713|gb|DR383472.1|DR383472
EST:     CCAACTCTAGAGAAAGTATTAGGGCTGTAAAAAGACTTGATCGTCTCAAG                         GATATGGTATCGAAACATGTTGACAACACGAGATCTAGATTTGCAGATCTA
genomic: CCAACTCTAGAGAAAGTATTAGGGCTGTAAAAAGACTTGATCGTCTCAAGgtttaatcac ... attcttgcagGATATGGTATCGAAACATGTTGACAACACGAGATCTAGATTTGCAGATCTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcttttgtttaatatgccgtaatctgaagtagaaactgcttacaattcttgcagGATATGGTATCGAAACATGTTGACAACACGAGATCTAGATTTGCAGATCTATTGTATGGTTTATTGGCATATGATCCATCTGAGCGTCTCACAGCAAACG
                                     tgcttac  putative branch site (score: 2)
                                              ttcttgc  putative PPT
     ttgtttaatat  TA-rich tract