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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgctcctctttcttcttcttctttttttaattaatctttgacatttagaacttcgaattagggtttagaatgtggaggaaagaccgagcatttatgtttctttggtgagattttgatatgctgacaatgaatgaattttgacttttttgtgatagGCTAAAAGGGCTGTGATTAAAGGACATGGAAGCGATGGGAGGATTTTGTCACCACCATTAAGGGACGATGATCGTGATGGTCATTATGTTTTCAGTTTGA

Basic information

species Arabidopsis thaliana
transcript AT4G32660.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876903|gb|AU237734.1|AU237734
EST:     TCAGGAAACGTCCTCGTATGACCTGGGACGAGGCCCCAGCTGAACCAGAG                         GCTAAAAGGGCTGTGATTAAAGGACATGGAAGCGATGGGAGGATTTTGTCA
genomic: TCAGGAAACGTCCTCGTATGACCTGGGACGAGGCCCCAGCTGAACCAGAGgttgctcctc ... tttgtgatagGCTAAAAGGGCTGTGATTAAAGGACATGGAAGCGATGGGAGGATTTTGTCA
EST: gi|116384701|gb|EG427293.1|EG427293
EST:     TCAGGAAACGTCCTCGTATGACCTGGGACGAGGCCCCAGCTGAACCAGAG                         GCTAAAAGGGCTGTGATTAAAGGACACGGAGGCGATGGGAGGATTTTGTCA
genomic: TCAGGAAACGTCCTCGTATGACCTGGGACGAGGCCCCAGCTGAACCAGAGgttgctcctc ... tttgtgatagGCTAAAAGGGCTGTGATTAAAGGACATGGAAGCGATGGGAGGATTTTGTCA
EST: gi|86068359|gb|DR364116.1|DR364116
EST:     TCAGGAAACGTNCTCGTATGACCTGGGACGAGGCCCCAGCTGAACCAGAG                         GCTAAAAGGGCTGTGATTAAAGGACATGGAAGCGATGGGAGGATTTTGTCA
genomic: TCAGGAAACGTCCTCGTATGACCTGGGACGAGGCCCCAGCTGAACCAGAGgttgctcctc ... tttgtgatagGCTAAAAGGGCTGTGATTAAAGGACATGGAAGCGATGGGAGGATTTTGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggtgagattttgatatgctgacaatgaatgaattttgacttttttgtgatagGCTAAAAGGGCTGTGATTAAAGGACATGGAAGCGATGGGAGGATTTTGTCACCACCATTAAGGGACGATGATCGTGATGGTCATTATGTTTTCAGTTTGA
                                         cttttttgt  CT-rich tract
                                 aattttgactttttt  TA-rich tract