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gtattttacatttccacttctcgtggcttatcgtgtacaatgctgttttggtcatttgttttttggggggctaaatttgctacctcttgcagGCGAGAAGCATTGTGGCCCGAGCTTGATACAATACTGAGGGAAGAAGGGGATACAGCTGTTGCCACACCATACACTGCAGCTGTGTTAGAATACAGAGTT
species | Arabidopsis thaliana |
transcript | AT4G30210.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTTGGTCTTGGAGATGATGACCAGTGTATTGAAGATGACTTTACCGCTTG GCGAGAAGCATTGTGGCCCGAGCTTGATACAATACTGAGGGAAGAAGGGGAEST: gi|116435705|gb|EG478297.1|EG478297
genomic: GTTGGTCTTGGAGATGATGACCAGTGTATTGAAGATGACTTTACCGCTTGgtattttaca ... cctcttgcagGCGAGAAGCATTGTGGCCCGAGCTTGATACAATACTGAGGGAAGAAGGGGA
EST: GTTGGTCTTGGAGATGATGACCAGTGTATTGAAGATGACTTTACCGCTTG GCGAGAAGCATTGEST: gi|86044359|gb|DR340114.1|DR340114
genomic: GTTGGTCTTGGAGATGATGACCAGTGTATTGAAGATGACTTTACCGCTTGgtattttaca ... cctcttgcagGCGAGAAGCATTG
EST: GTTGGTCTTGGAGATGATGACCAGTGTATTGAAGATGACTTTACCGCTTG GCGAGAAGCATTGTGGCCCGAGCTTGATACAATACTGAGGGAAGAAGGGGA
genomic: GTTGGTCTTGGAGATGATGACCAGTGTATTGAAGATGACTTTACCGCTTGgtattttaca ... cctcttgcagGCGAGAAGCATTGTGGCCCGAGCTTGATACAATACTGAGGGAAGAAGGGGA
caatgctgttttggtcatttgttttttggggggctaaatttgctacctcttgcagGCGAGAAGCATTGTGGCCCGAGCTTGATACAATACTGAGGGAAGAAGGGGATACAGCTGTTGCCACACCATACACTGCAGCTGTGTTAGAATACAGAGTT
ggctaaa putative branch site (score: 3)
ctacctctt putative PPT
atttgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttacatttccacttctcgtggcttatcgtgtacaatgctgttttggtcatttgttttttggggggctaaatttgctacctcttgcagGCGAGAAGCATTGTGGCCCGAGCTTGATACAATACTGAGGGAAGAAGGGGATACAGCTGTTGCCACACCATACACTGCAGCTGTGTTAGAATACAGAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG