Sequence
atgc intronic sequence ATGC exonic sequencegttagttttcttagctgatcttttgtttgggatcggtataagtattaaatttgatttgttcttgtggctgacttggttttactatctggaatctggatgtagATATGGAGATGGTGAGCCTACCGACAATGCAGCGAGATTCTACAAATGGTTCACCGAG
Basic information
| species | Arabidopsis thaliana |
| transcript | AT4G30210.1 |
| intron # | 3 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G30210.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: AC217947.4_FGT002 (Zea mays), 3'ss of exon 3
gttagttttcttagctgatcttttgtttgggatcggtataagtattaaatttgatttgttct-tgtggctgacttggttttactatctggaatctggatgtagATATGGAGATGGTGAGCCTACCGACAATGCAGCGAGATTCTACAAATGGTTCACCGAG------------------------------------------
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-tgaataatgttcaggggctctcgacatttggatgattt--gtttttcatttattttggagtacgaaatcaaggaaaacttcctcatgatacttttgttacagGTATGGAGATGGTGAGCCGACTGACAATGCTGCTAGGTTCTACAAATGGTTCACTGAGGGAAATGAGAGGGGTGTCTGGCTAAATGACTTTGAGTATGCT
upper sequence: AT4G30210.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G144407_T01 (Zea mays), 3'ss of exon 4
-----gttagttttcttagctgatcttttgtttgggatcggtataagtat-taaatttgatttgttcttgtggctgacttggttttactatctggaatctggatgtagATATGGAGATGGTGAGCCTACCGACAATGCAGCGAGATTCTACAAATGGTTCACCGAG------------------------------------------
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caacgggtgtgtgtgtgtgttttttttttttaaaaaattaattttggagtgcaaaatcaaggaagcctt----cctacctaatgttagt-tttgtaac---aattcagGTATGGAGATGGTGAGCCGACTGACAATGCTGTTAGGTTCTACAAATGGTTCACTGAGGGAAATGAGAGGGGTGTCTGGTTACATGATTTTGAGTATGCT
upper sequence: AT4G30210.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA13G00990.1 (Glycine max), 3'ss of exon 3
gttagttttcttagctgatcttttgtttgggatcggtataagtattaaatttgatttgttcttgtggctgacttggttttactatctggaatctggatgtagATATGGAGATGGTGAGCCTACCGACAATGCAGCGAGATTCTACAAATGGTTCACCGAG
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gtgagtgtctttcatcatttatttatttccttttggttt--gtttcta--ttaat--atttctgtgcttgttattatttaatctgttgtggtgtgggtgtagATATGGTGATGGTGAGCCAACTGATAATGCAGCGAGATTTTATAAATGGTTTACGGAG
upper sequence: AT4G30210.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA17G07050.2 (Glycine max), 3'ss of exon 3
gttagttttcttagctgatcttttgttt--gggatcggtataagtattaaatttg-atttgttcttgtggctgacttggtttta-ctatc--tggaatctggatgtagATATGGAGATGGTGAGCCTACCGACAATGCAGCGAGATTCTACAAATGGTTCACCGAG
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gtgagtgtttttcatcgtttatttatttttgggttgtttctatttaattttttcgtgcttgctattgtttggaatttaatttaatctgttgttgtggtgtgggtgtagATATGGTGATGGTGAGCCAACTGATAATGCCGCGAGATTTTATAAATGGTTTACAGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116435705|gb|EG478297.1|EG478297EST: TATGAGGAGAAATTGAAGAAAGAGGATGTGGCTTTCTTCTTCTTAGCCAC ATATGGAGATGGTGAGCCTACCGACAATGCAGCGAGATTCTACAAATGGTT
genomic: TATGAGGAGAAATTGAAGAAAGAGGATGTGGCTTTCTTCTTCTTAGCCACgttagttttc ... ctggatgtagATATGGAGATGGTGAGCCTACCGACAATGCAGCGAGATTCTACAAATGGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatttgatttgttcttgtggctgacttggttttactatctggaatctggatgtagATATGGAGATGGTGAGCCTACCGACAATGCAGCGAGATTCTACAAATGGTTCACCGAG
ggctgac putative branch site (score: 3)
ttttactat TA-rich tract
