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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAATGACAGAGGAGAATGGCTTAAGAACTTGAAGTATGGAGTGTTTGGATTAGGAAACAGACAATATGAGCATTTTAATAAGgtttataaatgaaatctttattccccttttcttaatggttttgctcttgtcactattatggtctccttccaattactttggaccgagctaatatgcagatttgttttgtaaattttgggttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G30210.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G30210.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA13G00990.1 (Glycine max), 5'ss of exon 5
GGGAATGACAGAGGAGAA---TGGCTTAAGAACTTGAAGTATGGAGTGTTTGGATTAGGAAACAGACAATATGAGCATTTTAATAAGgtttataaatgaaatctttattcccct--tttcttaatggttttgctcttgtcactattatggtctccttccaattactttggaccgagctaatatgcagatttgttttgtaaattttgggttgcag
|||  ||| | |||||||   |||||| ||||  |  | ||||| ||||||||  | |||||||| ||||||||||||||||| |||||||  |        |   | ||  ||   ||  ||| ||||||  | |  |    || ||||  |   |    || ||||||    |  ||||  ||||                           
GGGGGTGAGAAAGGAGAAGGATGGCTTGAGAATCTTCACTATGGTGTGTTTGGCCTTGGAAACAGGCAATATGAGCATTTTAACAAGgtttgcattgagttccaacaatcttctggctttctaaaggttttaatttgattttaatcatggagttgctt--gttgctttggc---aattaat--gcag---------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164152353|gb|ES205067.1|ES205067
EST:     CAATATGAGCATTTTAATAAG                         GTTGCCAAAGTTGTAGATGACATTCTTGTCGAACAAG
genomic: CAATATGAGCATTTTAATAAGgtttataaat ... tgggttgcagGTTGCCAAAGTTGTAGATGACATTCTTGTCGAACAAG
EST: gi|116435705|gb|EG478297.1|EG478297
EST:     AGTATGGAGTGTTTGGATTAGGAAACAGACAATATGAGCATTTTAATAAG                         GTTGCCAAAGTTGTAGATGACATTCTTGTCGAACAAG
genomic: AGTATGGAGTGTTTGGATTAGGAAACAGACAATATGAGCATTTTAATAAGgtttataaat ... tgggttgcagGTTGCCAAAGTTGTAGATGACATTCTTGTCGAACAAG