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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGCTGAAACTAGAATTCACGTCACATGTGCACTGGTTTATGAGAAAATGCCAACTGGCAGGATTCATAAGGGAGTGTGTTCCACTTGGATGAAGgtaaatataaaaaacttaaatctgatagcttcttgcaaacatattgctttggaatctttttactgtttgtgtcatttcttatccattgtcttggtgtttttgctgggtactgattttttgcatcgtaatcacag

Basic information

species Arabidopsis thaliana
transcript AT4G30210.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G30210.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA13G00990.1 (Glycine max), 5'ss of exon 13
GATTGCTGAAACTAGAATTCACGTCACATGTGCACTGGTTTATGAGAAAATGCCAACTGGCAGGATTCATAAGGGAGTGTGTTCCACTTGGATGAAGgtaaatataaaaaacttaaatctgatagcttcttgcaaacatattgctttggaatctttttactgtttgtgtcatttcttatccattgtcttggtgtttttgctgggtactgattttttgcatcgtaatcacag
 || |    ||  |||||||| || || |||||| | ||  |||| |||||||| ||||| |||||||| |||||||||||||| || ||||||||||||  ||||      |   || | || | |          | || |     | ||  | | |||       |  | | | |      || |  |  |   |                                 
AATGGTGCCAAACAGAATTCATGTTACCTGTGCATTAGTACATGATAAAATGCCCACTGGAAGGATTCACAAGGGAGTGTGTTCAACATGGATGAAGgtacttatatttgtttcctatattatggttaaactatttaagatcggcaaagtataatct-actaaaaagattgtctttaagtacaagtatcagcttgaat---------------------------------

upper sequence: AT4G30210.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: GLYMA17G07050.2 (Glycine max), 5'ss of exon 13
GATTGCTGAAACTAGAATTCACGTCACATGTGCACTGGTTTATGAGAAAATGCCAACTGGCAGGATTCATAAGGGAGTGTGTTCCACTTGGATGAAGgtaaatataaaaaacttaaatctgatagcttcttgcaaacatattgctttggaatctttttactgtttgtgtcatttcttatccattgtcttggtgtttttgctgggtactgattttttgcatcgtaatcacag
 || |    ||  |||||||| || || |||||| | ||  ||||||||||||| || || |||||||| || ||||||||||| || ||||||||||||  ||||       |   | |  ||  || | |  || ||  || ||  ||     ||  |    |   || | ||  |   ||||||||   ||    |        ||| |                   
AATGGTGCCAAACAGAATTCATGTTACCTGTGCATTAGTACATGAGAAAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAGgtacttata-------tttgtttcctaaattatggttaaaat--tgtttaaga-----ttggcaaagtaaatc-tatcaaaaagattgtcttcaagtgcaagtatcagcttgaat-------------------

upper sequence: AT4G30210.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv11s0052g00880.t01 (Vitis vinifera), 5'ss of exon 13
GATTGCTGAAACTAGAATTCACGTCACATGTGCACTGGTTTATGAGAAAATGCCAACTGGCAGGATTCATAAGGGAGTGTGTTCCACTTGGATGAAGgtaaatataaaaaacttaaatctgatagcttcttgcaaacatattgctttggaatctttttactgtttgtgtcatttcttatccattgtcttggtgtttttgctgggtactgattttttgcatcgtaatcacag
||| |    | |||||||||| ||||| |||||  |||||| ||| || ||||| || ||  ||||||| |||||  | ||||| |||||||||||||||  |  |    | ||   | |  ||| |  ||   ||| ||||| |   ||   | || ||  |||     |   ||   | |       |    |  ||  ||  |                         
GATGGTGCCATCTAGAATTCATGTCACTTGTGCCTTGGTTTGTGATAAGATGCCCACAGGACGGATTCACAAGGGTATTTGTTCAACTTGGATGAAGgtac-tgcattttatttctttattttagttctttt--aacttattgat---gatagtgttcacatttta---aagagctaggcaaggtaacagaaaatgatgaaggaaa-------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116436419|gb|EG479011.1|EG479011
EST:     AAATGCCAACTGGCAGGATTCATAAGGGAGTGTGTTCCACTTGGATGAAG                         AATGCTGTGCCTTACGAGAAGAGTGAAAACTGTTCCTCGGCGCCGATATTT
genomic: AAATGCCAACTGGCAGGATTCATAAGGGAGTGTGTTCCACTTGGATGAAGgtaaatataa ... gtaatcacagAATGCTGTGCCTTACGAGAAGAGTGAAAACTGTTCCTCGGCGCCGATATTT
EST: gi|86044356|gb|DR340111.1|DR340111
EST:     AAATGCCAACTGGCAGGATTCATAAGGGAGTGTGTTCCACTTGGATGAAA                         AATGCTGTGCCTTACGAGAAGAGTGAAAACTGTTCCTCGGCGCCGATATTT
genomic: AAATGCCAACTGGCAGGATTCATAAGGGAGTGTGTTCCACTTGGATGAAGgtaaatataa ... gtaatcacagAATGCTGTGCCTTACGAGAAGAGTGAAAACTGTTCCTCGGCGCCGATATTT
EST: gi|86044357|gb|DR340112.1|DR340112
EST:     AAATGCCAACTGGCAGGATTCATAAGGGAGTGTGTTCCACTTGGATGAAG                         AATGCTGTGCCTTACGAGAAGAGTGAAAACTGTTCCTCGGCGCCGATATTT
genomic: AAATGCCAACTGGCAGGATTCATAAGGGAGTGTGTTCCACTTGGATGAAGgtaaatataa ... gtaatcacagAATGCTGTGCCTTACGAGAAGAGTGAAAACTGTTCCTCGGCGCCGATATTT
EST: gi|86044360|gb|DR340115.1|DR340115
EST:     AAATGCCAACTGGCAGGATTCATAAGGGAGTGTGTTCCACTTGGATGAAG                         AATGCTGTGCCTTACGAGAAGAGTGAAAACTGTTCCTCGGCGCCGATATTT
genomic: AAATGCCAACTGGCAGGATTCATAAGGGAGTGTGTTCCACTTGGATGAAGgtaaatataa ... gtaatcacagAATGCTGTGCCTTACGAGAAGAGTGAAAACTGTTCCTCGGCGCCGATATTT
EST: gi|86044358|gb|DR340113.1|DR340113
EST:     AAATGCCAACTGGCAGGATTCATAAGGGAGTGTGTTCCACTTGGATGAAG                         AATGCTGTGCCTTACGAGAAGAGTGAAAACTGTTCCTCGGCGCCGATATTT
genomic: AAATGCCAACTGGCAGGATTCATAAGGGAGTGTGTTCCACTTGGATGAAGgtaaatataa ... gtaatcacagAATGCTGTGCCTTACGAGAAGAGTGAAAACTGTTCCTCGGCGCCGATATTT