1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaatgttataagattgaaactgttaaaactgaggttatgattgtatctcaagtgatggaatgataataattgaaccacttgtgaatatactcagAGGGAAGGTATTGAAGAGAAGACTCTGCTTAACAGGTTGGGAACAACGGGAGACATGGCTGCTGCGGCTGCTTTCTTAGCATCAGATGATTCTTCTTACA
species | Arabidopsis thaliana |
transcript | AT4G05530.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTTTGTGCCCACACACTTTGCTTCTTTCATCACCGGTAGCTCTGAAGTG AGGGAAGGTATTGAAGAGAAGACTCTGCTTAAEST: gi|47828188|gb|CK117872.1|CK117872
genomic: GTTTTGTGCCCACACACTTTGCTTCTTTCATCACCGGTAGCTCTGAAGTGgtaatgttat ... atatactcagAGGGAAGGTATTGAAGAGAAGACTCTGCTTAA
EST: GTTTTGTGCCCACACACTTTGCTTCTTTCATCACCGGTAGCTCTGAAGTG AGGGAAGGTATTGAAGAGAAGACTCTGCTTAACAGGTTGGGAACAACGGGAEST: gi|47829878|gb|CK119562.1|CK119562
genomic: GTTTTGTGCCCACACACTTTGCTTCTTTCATCACCGGTAGCTCTGAAGTGgtaatgttat ... atatactcagAGGGAAGGTATTGAAGAGAAGACTCTGCTTAACAGGTTGGGAACAACGGGA
EST: GTTTTGTGCCCACACACTTTGCTTCTTTCATCACCGGTAGCTCTGAAGTG AGGGAAGGTATTGAAGAGAAGACTCTGCTTAACAGGTTGGGAACAACGGGA
genomic: GTTTTGTGCCCACACACTTTGCTTCTTTCATCACCGGTAGCTCTGAAGTGgtaatgttat ... atatactcagAGGGAAGGTATTGAAGAGAAGACTCTGCTTAACAGGTTGGGAACAACGGGA
attgtatctcaagtgatggaatgataataattgaaccacttgtgaatatactcagAGGGAAGGTATTGAAGAGAAGACTCTGCTTAACAGGTTGGGAACAACGGGAGACATGGCTGCTGCGGCTGCTTTCTTAGCATCAGATGATTCTTCTTACA
aatgataataattgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgttataagattgaaactgttaaaactgaggttatgattgtatctcaagtgatggaatgataataattgaaccacttgtgaatatactcagAGGGAAGGTATTGAAGAGAAGACTCTGCTTAACAGGTTGGGAACAACGGGAGACATGGCTGCTGCGGCTGCTTTCTTAGCATCAGATGATTCTTCTTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG