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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTAGCAAAACTCAAATCCAAAGGGATTGATGCATATGGAATCGTCTGTCATGTTTCCAATGCTCAACATCGCCGCAATCTTGTCGAAAAGACGGTTCAGgtaacacatcctacgagcttttggttcaaagctcattgaaaaatttgatcatgaacagctttacataaccaagaagtttgtttttttattgttgttgatttgttgtgtgctttaagctcttactatctcacatttgcgcatctttgatttttacttaagagatgtcttctgtgtttttggattcag

Basic information

species Arabidopsis thaliana
transcript AT4G05530.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125182641|gb|EL197955.1|EL197955
EST:     GAAAAGACGGTTCAG                         AAATATGGGAAGATAGATATCGTTGTCTGTAACGCTGCTGCCAATCCATCT
genomic: GAAAAGACGGTTCAGgtaacacatc ... ttggattcagAAATATGGGAAGATAGATATCGTTGTCTGTAACGCTGCTGCCAATCCATCT
EST: gi|164153167|gb|ES193852.1|ES193852
EST:     TTGTCGAAAAGACGGTTCAG                         AAATATGGGAAGATAGATATTGTTGTCTGTAACGCTGCTGCCAATCCATCT
genomic: TTGTCGAAAAGACGGTTCAGgtaacacatc ... ttggattcagAAATATGGGAAGATAGATATCGTTGTCTGTAACGCTGCTGCCAATCCATCT
EST: gi|47828188|gb|CK117872.1|CK117872
EST:     ATGTTTCCAATGCTCAACATCGCCGCAATCTTGTCGAAAAGACGGTTCAG                         AAATATGGGAAGATAGATATCGTTGTCTGTAACGCTGCTGCCAATCCATCT
genomic: ATGTTTCCAATGCTCAACATCGCCGCAATCTTGTCGAAAAGACGGTTCAGgtaacacatc ... ttggattcagAAATATGGGAAGATAGATATCGTTGTCTGTAACGCTGCTGCCAATCCATCT
EST: gi|47829878|gb|CK119562.1|CK119562
EST:     ATGTTTCCAATGCTCAACATCGCCGCAATCTTGTCGAAAAGACGGTTCAG                         AAATATGGGAAGATAGATATCGTTGTCTGTAACGCTGCTGCCAATCCATCT
genomic: ATGTTTCCAATGCTCAACATCGCCGCAATCTTGTCGAAAAGACGGTTCAGgtaacacatc ... ttggattcagAAATATGGGAAGATAGATATCGTTGTCTGTAACGCTGCTGCCAATCCATCT