1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGCTGCCAATCCATCTACAGACCCAATCTTGTCTAGCAAAGAAGCTGTTCTTGACAAGCTTTGGGAAATCAATGTCAAATCCTCTATACTTCTCCTGCAGgtaaagcttccgtaagtgttagctttttgtttccatgacccgatagatcaattttttcttagatttgatttgactcctctatgtttattttatcag
species | Arabidopsis thaliana |
transcript | AT4G05530.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGACAAGCTTTGGGAAATCAATGTCAAATCCTCTATACTTCTTCTTCAG GATATGGCTCCTCACCTTGAGAAGGGTTCTTCTGTTATCTTEST: gi|47828188|gb|CK117872.1|CK117872
genomic: TTGACAAGCTTTGGGAAATCAATGTCAAATCCTCTATACTTCTCCTGCAGgtaaagcttc ... attttatcagGATATGGCTCCTCACCTTGAGAAGGGTTCTTCTGTTATCTT
EST: TTGACAAGCTTTGGGAAATCAATGTCAAATCCTCTATACTTCTCCTGCAG GATATGGCTCCTCACCTTGAGAAGGGTTCTTCTGTTATCTTCATAACTTCTEST: gi|47829878|gb|CK119562.1|CK119562
genomic: TTGACAAGCTTTGGGAAATCAATGTCAAATCCTCTATACTTCTCCTGCAGgtaaagcttc ... attttatcagGATATGGCTCCTCACCTTGAGAAGGGTTCTTCTGTTATCTTCATAACTTCT
EST: TTGACAAGCTTTGGGAAATCAATGTCAAATCCTCTATACTTCTCCTGCAG GATATGGCTCCTCACCTTGAGAAGGGTTCTTCTGTTATCTTCATAACTTCTEST: gi|164129474|gb|ES025405.1|ES025405
genomic: TTGACAAGCTTTGGGAAATCAATGTCAAATCCTCTATACTTCTCCTGCAGgtaaagcttc ... attttatcagGATATGGCTCCTCACCTTGAGAAGGGTTCTTCTGTTATCTTCATAACTTCT
EST: CAAATCCTCTATACTTCTCCTTCAG GATATGGCTCCTCACCTTGAGAAGGGTTCTTCTGTTATCTTCATAGCTTCT
genomic: CAAATCCTCTATACTTCTCCTGCAGgtaaagcttc ... attttatcagGATATGGCTCCTCACCTTGAGAAGGGTTCTTCTGTTATCTTCATAACTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGCCAATCCATCTACAGACCCAATCTTGTCTAGCAAAGAAGCTGTTCTTGACAAGCTTTGGGAAATCAATGTCAAATCCTCTATACTTCTCCTGCAGgtaaagcttccgtaagtgttagctttttgtttccatgacccgatagatcaattttttcttagatttgatttgactcctctatgtttattttatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG