1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtactatctggtatctgctttaaatcgatgctctttgatgcgtttgctatattggttttgatggagtttctaatctcacttcgatttcgaactgcgtatgcgtattttagtccctcattcatgggttttgctaaaacattgtctgcctacacaatgctgccttaatattttgctgctctttctatttcttgttttggcagAGGGATATTTAGCAACATACGGGACAAAGAATCTACACCGGTCTTATGGCCACTACTTGCAGTCTTTG
species | Arabidopsis thaliana |
transcript | AT4G05450.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCATAGGATCTCAAGATTGGGGTCTACTATTGTTAAACAGCTCGCAAGAG AGGGATATTTAGCAACATACGGGACAAAGAATCTACACCGGTCTTATGGCCEST: gi|116443734|gb|EG486326.1|EG486326
genomic: TCATAGGATCTCAAGATTGGGGTCTACTATTGTTAAACAGCTCGCAAGAGgtactatctg ... gttttggcagAGGGATATTTAGCAACATACGGGACAAAGAATCTACACCGGTCTTATGGCC
EST: TCATAGGATCTCAAGATTGGGGTCTACTATTGTTAAACAGCTCGCAAGAG AGGGATATTTAGCAACATACGGGACAAAGAATCTACGCCGGTCTTATGGCCEST: gi|116443712|gb|EG486304.1|EG486304
genomic: TCATAGGATCTCAAGATTGGGGTCTACTATTGTTAAACAGCTCGCAAGAGgtactatctg ... gttttggcagAGGGATATTTAGCAACATACGGGACAAAGAATCTACACCGGTCTTATGGCC
EST: TCATAGGATCTCAAGATTGGGGTCTACTATTGTTAAACAGCTCGCAAGAG AGGGATATTTAGCAACATACGGGACAAAGAATCTACACCGGTCTTATGGCC
genomic: TCATAGGATCTCAAGATTGGGGTCTACTATTGTTAAACAGCTCGCAAGAGgtactatctg ... gttttggcagAGGGATATTTAGCAACATACGGGACAAAGAATCTACACCGGTCTTATGGCC
cctacacaatgctgccttaatattttgctgctctttctatttcttgttttggcagAGGGATATTTAGCAACATACGGGACAAAGAATCTACACCGGTCTTATGGCCACTACTTGCAGTCTTTG
ccttaat putative branch site (score: 4)
ttttgctgctctttct CT-rich tract
ttaatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactatctggtatctgctttaaatcgatgctctttgatgcgtttgctatattggttttgatggagtttctaatctcacttcgatttcgaactgcgtatgcgtattttagtccctcattcatgggttttgctaaaacattgtctgcctacacaatgctgccttaatattttgctgctctttctatttcttgttttggcagAGGGATATTTAGCAACATACGGGACAAAGAATCTACACCGGTCTTATGGCCACTACTTGCAGTCTTTG
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