1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtaaaggtttctttttagctttggttaaattctgggtttgccttgttttcggtccacactcaaattaggttaaatttcaattctttcgaggtttcagCTAGGTGCTTTAGCGGCAGTGAACGATGATCGGTCATAGGATCTCAAGATTGGGGTCTACTATTGTTAAACAGCTCGCAAGAG
species | Arabidopsis thaliana |
transcript | AT4G05450.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTGGATCTTTTTGGCATCGTTAATCTCAATTCTCAAGACAGGTAGATTG CTAGGTGCTTTAGCGGCAGTGAACGATGATCGGTCATAGGATCTCAAGATTEST: gi|116443734|gb|EG486326.1|EG486326
genomic: TTTGGATCTTTTTGGCATCGTTAATCTCAATTCTCAAGACAGGTAGATTGgtgagtaaag ... gaggtttcagCTAGGTGCTTTAGCGGCAGTGAACGATGATCGGTCATAGGATCTCAAGATT
EST: TTTGGATCTTTTTGGCATCGTTAATCTCAATTCTCAAGACAGGTAGATTG CTAGGTGCTTTAGCGGCAGTGAACGATGATCGGTCATAGGATCTCAAGATTEST: gi|116443712|gb|EG486304.1|EG486304
genomic: TTTGGATCTTTTTGGCATCGTTAATCTCAATTCTCAAGACAGGTAGATTGgtgagtaaag ... gaggtttcagCTAGGTGCTTTAGCGGCAGTGAACGATGATCGGTCATAGGATCTCAAGATT
EST: TTTGGATCTTTTTGGCATCGTTAATCTCAATTCTCAAGACAGGTAGATTG CTAGGTGCTTTAGCGGCAGTGAACGATGATCGGTCATAGGATCTCAAGATT
genomic: TTTGGATCTTTTTGGCATCGTTAATCTCAATTCTCAAGACAGGTAGATTGgtgagtaaag ... gaggtttcagCTAGGTGCTTTAGCGGCAGTGAACGATGATCGGTCATAGGATCTCAAGATT
ttgttttcggtccacactcaaattaggttaaatttcaattctttcgaggtttcagCTAGGTGCTTTAGCGGCAGTGAACGATGATCGGTCATAGGATCTCAAGATTGGGGTCTACTATTGTTAAACAGCTCGCAAGAG
ttctttcg CT-rich tract
aaattaggttaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtaaaggtttctttttagctttggttaaattctgggtttgccttgttttcggtccacactcaaattaggttaaatttcaattctttcgaggtttcagCTAGGTGCTTTAGCGGCAGTGAACGATGATCGGTCATAGGATCTCAAGATTGGGGTCTACTATTGTTAAACAGCTCGCAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA