Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTATGGTCCCAATGAAGCATTTTTGGCCTATTAGACAAAACAACAAATGTGGTGACCTCAAATTTGCAGTCGAATGGGGCAACAACAACACCGAAAAGgtaaccaaaaatatctaatatctatattgaaattttcaataattttaaattctagtgactagtttctaatttctgatcagtgataacctgtcatcacccatgattctttttgtgattgtcttaaattcattatatatatatag

Basic information

species Arabidopsis thaliana
transcript AT3G61280.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116427072|gb|EG469664.1|EG469664
EST:     GTGGTGACCTCAAATTTGCAGTCGAATGGGGCAACAACAACACCGAAAAG                         GCACAAATCATAGGGAGACAAGGAAGTGAGTACATGATGAAGAACCTAAAG
genomic: GTGGTGACCTCAAATTTGCAGTCGAATGGGGCAACAACAACACCGAAAAGgtaaccaaaa ... atatatatagGCACAAATCATAGGGAGACAAGGAAGTGAGTACATGATGAAGAACCTAAAG
EST: gi|116410486|gb|EG453078.1|EG453078
EST:     GTGGTGACCTCAAATTTGCAGTCGAATGGGGCAACAACAACACCGAAAAG                         GCACAAATCATAGGGAGACAAGGAAGTGAGTACATGATGAAGAACCTAAAG
genomic: GTGGTGACCTCAAATTTGCAGTCGAATGGGGCAACAACAACACCGAAAAGgtaaccaaaa ... atatatatagGCACAAATCATAGGGAGACAAGGAAGTGAGTACATGATGAAGAACCTAAAG
EST: gi|116427099|gb|EG469691.1|EG469691
EST:     TGCAGTCGAATGGGGCAACAACAACACCGAAAAG                         GCACAAATCATAGGGAGACAAGGAAGTGAGTACATGATGAAGAACCTAAAG
genomic: TGCAGTCGAATGGGGCAACAACAACACCGAAAAGgtaaccaaaa ... atatatatagGCACAAATCATAGGGAGACAAGGAAGTGAGTACATGATGAAGAACCTAAAG
EST: gi|116410475|gb|EG453067.1|EG453067
EST:     GTGGTGACCTCAAATTTGCAGTCGAATGGGGCAACAACAACACCGAAAAG                         GCACAAATCATAGGGAGACAAGGAAGTGAGTACATGATGAAGAACCTAAAG
genomic: GTGGTGACCTCAAATTTGCAGTCGAATGGGGCAACAACAACACCGAAAAGgtaaccaaaa ... atatatatagGCACAAATCATAGGGAGACAAGGAAGTGAGTACATGATGAAGAACCTAAAG
EST: gi|125309110|gb|EL323195.1|EL323195
EST:     GCGGTGACCTCAAATTTGCAGTCGAATGGGGCAACAACAACACCGAAAAG                         GCACAAATCATAGGGAGA
genomic: GTGGTGACCTCAAATTTGCAGTCGAATGGGGCAACAACAACACCGAAAAGgtaaccaaaa ... atatatatagGCACAAATCATAGGGAGA
EST: gi|116427074|gb|EG469666.1|EG469666
EST:     GTGGTGACCTCAAATTTGCAGTCGAATGGGGCAACAACAACACCGAAAAG                         GCACAAATCATAGGGAGACAAGGAAGTGAGTACATGATGAAGAACCTAAAG
genomic: GTGGTGACCTCAAATTTGCAGTCGAATGGGGCAACAACAACACCGAAAAGgtaaccaaaa ... atatatatagGCACAAATCATAGGGAGACAAGGAAGTGAGTACATGATGAAGAACCTAAAG
EST: gi|116427101|gb|EG469693.1|EG469693
EST:     TGCAGTCGAATGGGGCAACAACAACACCGAAAAG                         GCACAAATCATAGGGAGACAAGGAAGTGAGTACATGATGAAGAACCTAAAG
genomic: TGCAGTCGAATGGGGCAACAACAACACCGAAAAGgtaaccaaaa ... atatatatagGCACAAATCATAGGGAGACAAGGAAGTGAGTACATGATGAAGAACCTAAAG
EST: gi|116410476|gb|EG453068.1|EG453068
EST:     GTGGTGACCTCAAATTTGCAGTCGAATGGGGCAACAACAACACCGAAAAG                         GCACAAATCATAGGGAGACAAGGAAGTGAGTACATGATGAAGAACCTAAAG
genomic: GTGGTGACCTCAAATTTGCAGTCGAATGGGGCAACAACAACACCGAAAAGgtaaccaaaa ... atatatatagGCACAAATCATAGGGAGACAAGGAAGTGAGTACATGATGAAGAACCTAAAG
EST: gi|116427073|gb|EG469665.1|EG469665
EST:     GTGGTGACCTCAAATTTGCAGTCGAATGGGGCAACAACAACACCGAAAAG                         GCACAAATCATAGGGAGACAAGGAAGTGAGTACATGATGAAGAACCTAAAG
genomic: GTGGTGACCTCAAATTTGCAGTCGAATGGGGCAACAACAACACCGAAAAGgtaaccaaaa ... atatatatagGCACAAATCATAGGGAGACAAGGAAGTGAGTACATGATGAAGAACCTAAAG
EST: gi|116410485|gb|EG453077.1|EG453077
EST:     GTGGTGACCTCAAATTTGCAGTCGAATGGGGCAACAACAACACCGAAAAG                         GCACAAATCATAGGGAGACAAGGAAGTGAGTACATGATGAAGAACCTAAAG
genomic: GTGGTGACCTCAAATTTGCAGTCGAATGGGGCAACAACAACACCGAAAAGgtaaccaaaa ... atatatatagGCACAAATCATAGGGAGACAAGGAAGTGAGTACATGATGAAGAACCTAAAG