1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgacttttcatcaacattatcacaataatatctctaaaatctggtcaagaacgtatatgggcccgtattaacaaacaaatgacataaacattgactattcttttctttagGCCTGAGCTGAATATAAAGGAGTGGAATAAATTATCTGTGGCACTAAAAGAAGGGAACAAAAAGGTGAAATGGGAAGATAGAGTTCCGTACGCTTATTGG
species | Arabidopsis thaliana |
transcript | AT3G61280.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CACCGTGATGCATACGACATAGTTTTCCCCGATTGGAGCTTCTGGGGATG GCCTGAGCTGAATATAAAGGAGTGGAATAAATTATCTGTGGCACTAAAAGAEST: gi|116427071|gb|EG469663.1|EG469663
genomic: CACCGTGATGCATACGACATAGTTTTCCCTGATTGGAGCTTCTGGGGATGgtatgacttt ... ttttctttagGCCTGAGCTGAATATAAAGGAGTGGAATAAATTATCTGTGGCACTAAAAGA
EST: CACCGTGATGCATACGACATAGTTTTCCCCGATTGGAGCTTCTGGGGATG GCCTGAGCTGAATATAAAGGAGTGGAATAAATTATCTGTGGCACTAAAAEST: gi|116410475|gb|EG453067.1|EG453067
genomic: CACCGTGATGCATACGACATAGTTTTCCCTGATTGGAGCTTCTGGGGATGgtatgacttt ... ttttctttagGCCTGAGCTGAATATAAAGGAGTGGAATAAATTATCTGTGGCACTAAAA
EST: CACCGTGATGCATACGACATAGTTTTCCCTGATTGGAGCTTCTGGGGATG GCCTGAGCTGAATATAAAGGAGTGGAATAAATTATCTGTGGTACTAAAAGAEST: gi|116410485|gb|EG453077.1|EG453077
genomic: CACCGTGATGCATACGACATAGTTTTCCCTGATTGGAGCTTCTGGGGATGgtatgacttt ... ttttctttagGCCTGAGCTGAATATAAAGGAGTGGAATAAATTATCTGTGGCACTAAAAGA
EST: CACCGTGATGCATACGACATAGTTTTCCCTGATTGGAGCTTCTGGGGATG GCCTGAGCTGAATATAAAGGAGTGGAATAAATTATCTGTGGTACTAAAAGA
genomic: CACCGTGATGCATACGACATAGTTTTCCCTGATTGGAGCTTCTGGGGATGgtatgacttt ... ttttctttagGCCTGAGCTGAATATAAAGGAGTGGAATAAATTATCTGTGGCACTAAAAGA
tatgggcccgtattaacaaacaaatgacataaacattgactattcttttctttagGCCTGAGCTGAATATAAAGGAGTGGAATAAATTATCTGTGGCACTAAAAGAAGGGAACAAAAAGGTGAAATGGGAAGATAGAGTTCCGTACGCTTATTGG
ctattcttttcttt CT-rich tract
tattaacaaacaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgacttttcatcaacattatcacaataatatctctaaaatctggtcaagaacgtatatgggcccgtattaacaaacaaatgacataaacattgactattcttttctttagGCCTGAGCTGAATATAAAGGAGTGGAATAAATTATCTGTGGCACTAAAAGAAGGGAACAAAAAGGTGAAATGGGAAGATAGAGTTCCGTACGCTTATTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA