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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATTGGAAAGGAAACCCTCATGTTTCTCCTATAAGAGGAGATCTTATGAGATGTAACTTCTCCGACAAGTATGATCCTATGGTTCGTCTCTATGTCCAGgtattacatatatgtctcctatatatacatgtttcaatgtgtatgtaagtttgaaaccaaataattaatgaaacttgaaattaatgacgtcacccgcatt...

Basic information

species Arabidopsis thaliana
transcript AT3G61280.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116427072|gb|EG469664.1|EG469664
EST:     GATGTAACTTCTCCGACAAGTATGATCCTATGGTTCGTCTCTATGTCCAG                         GATTGGAGGAGTGAGATAGAGGCAGGGTTCAGAGGATCGAACCTAGAAGAT
genomic: GATGTAACTTCTCCGACAAGTATGATCCTATGGTTCGTCTCTATGTCCAGgtattacata ... tgttgtctagGATTGGAGGAGTGAGATAGAGGCAGGGTTCAGAGGATCGAACCTAGAAGAT
EST: gi|116410475|gb|EG453067.1|EG453067
EST:     GATGTAACTTCTCCGACAAGTATGATCCTATGGTTCGTCTCTATGTCCAG                         GATTGGAGGAGTGAGATAGAGGCAGGGTTCAGAGGATCGAACCTGGAAGAT
genomic: GATGTAACTTCTCCGACAAGTATGATCCTATGGTTCGTCTCTATGTCCAGgtattacata ... tgttgtctagGATTGGAGGAGTGAGATAGAGGCAGGGTTCAGAGGATCGAACCTAGAAGAT
EST: gi|125023814|gb|EL096083.1|EL096083
EST:     TCTATGTCCAG                         GATTGGAGGAGTGAGATAGAGGCAGGGTTCAGAGGATCGAACCTAGAAGAT
genomic: TCTATGTCCAGgtattacata ... tgttgtctagGATTGGAGGAGTGAGATAGAGGCAGGGTTCAGAGGATCGAACCTAGAAGAT
EST: gi|116410485|gb|EG453077.1|EG453077
EST:     GATGTAACTTCTCCGACAAGTATGATCCTATGGTTCGTCTCTATGTCCAG                         GATTGGAGGAGTGAGATAGAGGCAGGGTTCAGAGGATCGAACCTGGAAGAT
genomic: GATGTAACTTCTCCGACAAGTATGATCCTATGGTTCGTCTCTATGTCCAGgtattacata ... tgttgtctagGATTGGAGGAGTGAGATAGAGGCAGGGTTCAGAGGATCGAACCTAGAAGAT