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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatgtgcaggatacattcactagatcacgtatatcttattaatattaggtttgtttttaatatattagtaaacattttggatttgaacttggacatttagATATAAGATCTACATAGAAGGAAACGCATGGTCGGTGAGCGAAAAGTATATACTTTCGTGTGATAGTATGACTCTGTTGGTTAAACCAGAGTACTACGAC

Basic information

species Arabidopsis thaliana
transcript AT3G61280.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116427072|gb|EG469664.1|EG469664
EST:     ATAGAGGCAGGGTTCAGAGGATCGAACCTAGAAGATCAATGTACTCATAG                         ATATAAGATCTACATAGAAGGAAACGCATGGTCGGTGAGCGAAAAGTATAT
genomic: ATAGAGGCAGGGTTCAGAGGATCGAACCTAGAAGATCAATGTACTCATAGgtatatgtgc ... ggacatttagATATAAGATCTACATAGAAGGAAACGCATGGTCGGTGAGCGAAAAGTATAT
EST: gi|116410475|gb|EG453067.1|EG453067
EST:     ATAGAGGCAGGGTTCAGAGGATCGAACCTGGAAGATCAATGTACTCATAG                         ATATAAGATCTACATAGAAGGAAACGCATGGTCGGTGAGCGAAAAGTATAT
genomic: ATAGAGGCAGGGTTCAGAGGATCGAACCTAGAAGATCAATGTACTCATAGgtatatgtgc ... ggacatttagATATAAGATCTACATAGAAGGAAACGCATGGTCGGTGAGCGAAAAGTATAT
EST: gi|116410476|gb|EG453068.1|EG453068
EST:     GATCAATGTACTCATAG                         ATATAAGATCTACATAGAAGGAAACGCATGGTCGGTGAGCGAAAAGTATAT
genomic: GATCAATGTACTCATAGgtatatgtgc ... ggacatttagATATAAGATCTACATAGAAGGAAACGCATGGTCGGTGAGCGAAAAGTATAT
EST: gi|125023814|gb|EL096083.1|EL096083
EST:     ATAGAGGCAGGGTTCAGAGGATCGAACCTAGAAGATCAATGTACTCATAG                         ATATAAGATCTACATAG
genomic: ATAGAGGCAGGGTTCAGAGGATCGAACCTAGAAGATCAATGTACTCATAGgtatatgtgc ... ggacatttagATATAAGATCTACATAG
EST: gi|116410485|gb|EG453077.1|EG453077
EST:     ATAGAGGCAGGGTTCAGAGGATCGAACCTGGAAGATCAATGTACTCATAG                         ATATAAGATCTACATAGAAGGAAACGCATGGTCGGTGAGCGAAAAGTATAT
genomic: ATAGAGGCAGGGTTCAGAGGATCGAACCTAGAAGATCAATGTACTCATAGgtatatgtgc ... ggacatttagATATAAGATCTACATAGAAGGAAACGCATGGTCGGTGAGCGAAAAGTATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggtttgtttttaatatattagtaaacattttggatttgaacttggacatttagATATAAGATCTACATAGAAGGAAACGCATGGTCGGTGAGCGAAAAGTATATACTTTCGTGTGATAGTATGACTCTGTTGGTTAAACCAGAGTACTACGAC
         ttttaat  putative branch site (score: 3)
     ttgtttttaatatatt  TA-rich tract