1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atagtgatcttgtccaggtattctcaaacatgtactaaagtgatttaaatttttcattgattcatcatttcattgtgaccttgtctcatatgttgtctagGATTGGAGGAGTGAGATAGAGGCAGGGTTCAGAGGATCGAACCTAGAAGATCAATGTACTCATAG
species | Arabidopsis thaliana |
transcript | AT3G61280.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATGTAACTTCTCCGACAAGTATGATCCTATGGTTCGTCTCTATGTCCAG GATTGGAGGAGTGAGATAGAGGCAGGGTTCAGAGGATCGAACCTAGAAGATEST: gi|116410475|gb|EG453067.1|EG453067
genomic: GATGTAACTTCTCCGACAAGTATGATCCTATGGTTCGTCTCTATGTCCAGgtattacata ... tgttgtctagGATTGGAGGAGTGAGATAGAGGCAGGGTTCAGAGGATCGAACCTAGAAGAT
EST: GATGTAACTTCTCCGACAAGTATGATCCTATGGTTCGTCTCTATGTCCAG GATTGGAGGAGTGAGATAGAGGCAGGGTTCAGAGGATCGAACCTGGAAGATEST: gi|125023814|gb|EL096083.1|EL096083
genomic: GATGTAACTTCTCCGACAAGTATGATCCTATGGTTCGTCTCTATGTCCAGgtattacata ... tgttgtctagGATTGGAGGAGTGAGATAGAGGCAGGGTTCAGAGGATCGAACCTAGAAGAT
EST: TCTATGTCCAG GATTGGAGGAGTGAGATAGAGGCAGGGTTCAGAGGATCGAACCTAGAAGATEST: gi|116410485|gb|EG453077.1|EG453077
genomic: TCTATGTCCAGgtattacata ... tgttgtctagGATTGGAGGAGTGAGATAGAGGCAGGGTTCAGAGGATCGAACCTAGAAGAT
EST: GATGTAACTTCTCCGACAAGTATGATCCTATGGTTCGTCTCTATGTCCAG GATTGGAGGAGTGAGATAGAGGCAGGGTTCAGAGGATCGAACCTGGAAGAT
genomic: GATGTAACTTCTCCGACAAGTATGATCCTATGGTTCGTCTCTATGTCCAGgtattacata ... tgttgtctagGATTGGAGGAGTGAGATAGAGGCAGGGTTCAGAGGATCGAACCTAGAAGAT
taaatttttcattgattcatcatttcattgtgaccttgtctcatatgttgtctagGATTGGAGGAGTGAGATAGAGGCAGGGTTCAGAGGATCGAACCTAGAAGATCAATGTACTCATAG
cattgat putative branch site (score: 4)
ttttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagtgatcttgtccaggtattctcaaacatgtactaaagtgatttaaatttttcattgattcatcatttcattgtgaccttgtctcatatgttgtctagGATTGGAGGAGTGAGATAGAGGCAGGGTTCAGAGGATCGAACCTAGAAGATCAATGTACTCATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA