1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTTAAGTCAAGAATGATGGGAGATTCTGGTGCTTACAAGGGCACCATTGACTGCTTCGTCAAAACTCTGAAGAGCGACgtaagcaactctgcttctgatacctccattgttctagatataacccagaaaatgttacaaactctttacggtttcctctacag
species | Arabidopsis thaliana |
transcript | AT3G54110.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CACCATTGACTGCTTCGTCAAAACTCTGAAGAGCGAC GGTCCTATGGCATTTTACAAGGGTTTCATCCCCAACTTTGGACGCCTTGGCEST: gi|47832162|gb|CK121846.1|CK121846
genomic: CACCATTGACTGCTTCGTCAAAACTCTGAAGAGCGACgtaagcaact ... tcctctacagGGTCCTATGGCATTTTACAAGGGTTTCATCCCCAACTTTGGACGCCTTGGC
EST: GTGCTTACAAGGGCACCATTGACTGCTTCGTCAAAACTCTGAAGAGCGAC GGTCCTATGGCATTTTACAAGGGTTTCATCCCCAACTTTGGACGCCTTGGCEST: gi|125103448|gb|EL157852.1|EL157852
genomic: GTGCTTACAAGGGCACCATTGACTGCTTCGTCAAAACTCTGAAGAGCGACgtaagcaact ... tcctctacagGGTCCTATGGCATTTTACAAGGGTTTCATCCCCAACTTTGGACGCCTTGGC
EST: CTTCGTCAAAACTCTGAAGAGCGAC GGTCCTATGGCATTTTACAAGGGTTTCATCCCCAACTTTGGACGCCTTGGCEST: gi|86087003|gb|DR382762.1|DR382762
genomic: CTTCGTCAAAACTCTGAAGAGCGACgtaagcaact ... tcctctacagGGTCCTATGGCATTTTACAAGGGTTTCATCCCCAACTTTGGACGCCTTGGC
EST: GTGCTTACAAGGGCACCATTGACTGCTTCGTCAAAACTYTGAAGAGCGAC GGTCCTATGGCATTTTACAAGGGTTTCATCCCCAACTTTGGACGCCTTGGCEST: gi|86081786|gb|DR377545.1|DR377545
genomic: GTGCTTACAAGGGCACCATTGACTGCTTCGTCAAAACTCTGAAGAGCGACgtaagcaact ... tcctctacagGGTCCTATGGCATTTTACAAGGGTTTCATCCCCAACTTTGGACGCCTTGGC
EST: GTGCTTACAAGGGCACCATTGATTGCTTCGTCAAAACTCTGAAGAGCGAC GGTCCTATGGCATTTTACAAGGGTTTCATCCCCAACTTTGGACGCCTTGGC
genomic: GTGCTTACAAGGGCACCATTGACTGCTTCGTCAAAACTCTGAAGAGCGACgtaagcaact ... tcctctacagGGTCCTATGGCATTTTACAAGGGTTTCATCCCCAACTTTGGACGCCTTGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTAAGTCAAGAATGATGGGAGATTCTGGTGCTTACAAGGGCACCATTGACTGCTTCGTCAAAACTCTGAAGAGCGACgtaagcaactctgcttctgatacctccattgttctagatataacccagaaaatgttacaaactctttacggtttcctctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA