1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgaaactaatatgttctctgtctctctttctaaataagagatcctgatatttgaagcaaccaacattcctttttttttttgtgttcagACGATCTTGAAGATTCCGGGTTTCACTGACAACGTTGTCACACATATTCTATCTGGACTGGGAGCAGGATTCTTTGCTGTCTGCATCGGCTCTCCTGTCG
species | Arabidopsis thaliana |
transcript | AT3G54110.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACGCTATTATCAATGCTGCTGAATTAGCGAGTTACGATCAAGTGAAAGAG ACGATCTTGAAGATTCCGGGTTTCACTGACAACGTTGTCACACATATTCTAEST: gi|86087003|gb|DR382762.1|DR382762
genomic: ACGCTATTATCAATGCTGCTGAATTAGCGAGTTACGATCAAGTGAAAGAGgtatgaaact ... ttgtgttcagACGATCTTGAAGATTCCGGGTTTCACTGACAACGTTGTCACACATATTCTA
EST: ACGCTATTATCAATGCTGCTGAATTAGCGAGTTACGATCAAGTGAAAGAG MCGWTCTTGAAGATTCCGGGTTTCACTGACAACGTTGTCACACATATTCTAEST: gi|86081786|gb|DR377545.1|DR377545
genomic: ACGCTATTATCAATGCTGCTGAATTAGCGAGTTACGATCAAGTGAAAGAGgtatgaaact ... ttgtgttcagACGATCTTGAAGATTCCGGGTTTCACTGACAACGTTGTCACACATATTCTA
EST: ACGCTATTATCAATGCTGCTGAATTAGCGAGTTACGATCAAGTGAAAGAG ACTATCTTGAAGATTCCAGGGTT-CACTGACAACGTTGTCACACATATTCTEST: gi|125063361|gb|EL131369.1|EL131369
genomic: ACGCTATTATCAATGCTGCTGAATTAGCGAGTTACGATCAAGTGAAAGAGgtatgaaact ... ttgtgttcagACGATCTTGAAGATTCC-GGGTTTCACTGACAACGTTGTCACACATATTCT
EST: ACGCTATTATCAATGCTGCTGAATTAGCGAGTTACGATCAAGTGAAAGAG ACGATCTTGAAGATTCCGGGTTTCACTGACAACGTTGTCAC
genomic: ACGCTATTATCAATGCTGCTGAATTAGCGAGTTACGATCAAGTGAAAGAGgtatgaaact ... ttgtgttcagACGATCTTGAAGATTCCGGGTTTCACTGACAACGTTGTCAC
ataagagatcctgatatttgaagcaaccaacattcctttttttttttgtgttcagACGATCTTGAAGATTCCGGGTTTCACTGACAACGTTGTCACACATATTCTATCTGGACTGGGAGCAGGATTCTTTGCTGTCTGCATCGGCTCTCCTGTCG
tcctgat putative branch site (score: 3)
cattcctttttttttt putative PPT
attccttttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaaactaatatgttctctgtctctctttctaaataagagatcctgatatttgaagcaaccaacattcctttttttttttgtgttcagACGATCTTGAAGATTCCGGGTTTCACTGACAACGTTGTCACACATATTCTATCTGGACTGGGAGCAGGATTCTTTGCTGTCTGCATCGGCTCTCCTGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG