1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagcataacgatagaccagcttagaaaaaacacgtaatatatatttcctctttatcacttagttgggctgtttttgttgtctaactctcagGTGCACTGGGTATCATGGTAGCAAATCCCACTGATCTTGTGAAAGTTAGGCTTCAGGCCGAAGGAAAACTAGCTGCAGGTGCGCCAAGACGGTATTCTGG
species | Arabidopsis thaliana |
transcript | AT3G54110.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTAGGTGATGTTCCATTGAGCAAGAAAATTCTTGCTGGTTTGACAACAG GTGCACTGGGTATCATGGTAGCAAATCCCACTGATCTTGTGAAAGTTAGGCEST: gi|86059204|gb|DR354961.1|DR354961
genomic: TGTAGGTGATGTTCCATTGAGCAAGAAAATTCTTGCTGGTTTGACAACAGgtgagcataa ... taactctcagGTGCACTGGGTATCATGGTAGCAAATCCCACTGATCTTGTGAAAGTTAGGC
EST: TGTAGGTGATGTTCCATTGAGCAAGAAAATTCTTGCTGGTTTGACAACAG GTGCACTGGGTATCATGGTAGCAAATCCCACTGATCTTGTGAAAGTTAGGCEST: gi|86059186|gb|DR354943.1|DR354943
genomic: TGTAGGTGATGTTCCATTGAGCAAGAAAATTCTTGCTGGTTTGACAACAGgtgagcataa ... taactctcagGTGCACTGGGTATCATGGTAGCAAATCCCACTGATCTTGTGAAAGTTAGGC
EST: TGTAGGTGATGTTCCATTGAGCAAGAAAATTCTTGCTGGTTTGACAACAG GTGCACTGGGTATCATGGTAGCAAATCCCACTGATCTTGTGAAAGTTAGGCEST: gi|164185584|gb|EL978856.1|EL978856
genomic: TGTAGGTGATGTTCCATTGAGCAAGAAAATTCTTGCTGGTTTGACAACAGgtgagcataa ... taactctcagGTGCACTGGGTATCATGGTAGCAAATCCCACTGATCTTGTGAAAGTTAGGC
EST: TGTAGGTGATGTTCCATTGAGCAAG-AAATTCTTGCTGGTTTGACAACAG GTGCACTGGGTATCATGGTAGCAAATCCCACTGATCTTGTGAAAG
genomic: TGTAGGTGATGTTCCATTGAGCAAGAAAATTCTTGCTGGTTTGACAACAGgtgagcataa ... taactctcagGTGCACTGGGTATCATGGTAGCAAATCCCACTGATCTTGTGAAAG
atatatatttcctctttatcacttagttgggctgtttttgttgtctaactctcagGTGCACTGGGTATCATGGTAGCAAATCCCACTGATCTTGTGAAAGTTAGGCTTCAGGCCGAAGGAAAACTAGCTGCAGGTGCGCCAAGACGGTATTCTGG
gtctaac putative branch site (score: 2)
ctctc CT-rich tract
tttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcataacgatagaccagcttagaaaaaacacgtaatatatatttcctctttatcacttagttgggctgtttttgttgtctaactctcagGTGCACTGGGTATCATGGTAGCAAATCCCACTGATCTTGTGAAAGTTAGGCTTCAGGCCGAAGGAAAACTAGCTGCAGGTGCGCCAAGACGGTATTCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG