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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGTCTCCTGAATCAGGGGATTGTAATCTCGAGTCTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAAgtgagtattttctgttctgcatttgattatagatatacattttcccctttcactcattctcattcttgatgcttcatttgtgtatcatattctagatttcaagatgtattgatcctctctctaactcgagccattcttctcttaacacag

Basic information

species Arabidopsis thaliana
transcript AT3G54060.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116394628|gb|EG437220.1|EG437220
EST:     CTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAA                         ACAAGATTTGAAAGCAAAGAGTGACATGACAGACAATTGACTGATTTTGAA
genomic: CTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAAgtgagtattt ... cttaacacagACAAGATTTGAAAGCAAAGAGTGACATGACAGACAATTGACTGATTTTGAA
EST: gi|116384866|gb|EG427458.1|EG427458
EST:     CTGCCCACCCCTTTTTGGAATATACATCACCCGTGACTGATGTGATTCAA                         ACAAGATTTGAAAGCAAAGAGTGACATGACAGACAATTGACTGATTTTGAA
genomic: CTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAAgtgagtattt ... cttaacacagACAAGATTTGAAAGCAAAGAGTGACATGACAGACAATTGACTGATTTTGAA
EST: gi|116412372|gb|EG454964.1|EG454964
EST:     TTGACCAGCCCTTTTTGGAATATACATCAACCGGGACTGATGTGATTCAA                         ACAAGATTTGAAAGCAAAGAGTGACATGACAG
genomic: CTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAAgtgagtattt ... cttaacacagACAAGATTTGAAAGCAAAGAGTGACATGACAG
EST: gi|116412394|gb|EG454986.1|EG454986
EST:     CTGCCCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAA                         ACAAGATTTGAAAGCAAAGAGTGACATGACAGACAATTGACTGATTTTGAA
genomic: CTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAAgtgagtattt ... cttaacacagACAAGATTTGAAAGCAAAGAGTGACATGACAGACAATTGACTGATTTTGAA
EST: gi|116384858|gb|EG427450.1|EG427450
EST:     CTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAA                         ACAAGATTTGAAAGCAAAGAGTGACATGACAGACAATTGACTGATTTTGAA
genomic: CTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAAgtgagtattt ... cttaacacagACAAGATTTGAAAGCAAAGAGTGACATGACAGACAATTGACTGATTTTGAA
EST: gi|116412427|gb|EG455019.1|EG455019
EST:     CTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAA                         ACAAGATTTGAAAGCAAAGAGTGACATGACAGACAATTGACTGATTTTGAA
genomic: CTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAAgtgagtattt ... cttaacacagACAAGATTTGAAAGCAAAGAGTGACATGACAGACAATTGACTGATTTTGAA
EST: gi|116384868|gb|EG427460.1|EG427460
EST:     CTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAA                         ACAAGATTTGAAAGCAAAGAGTGACATGACAGACAATTGACTGATTTTGAA
genomic: CTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAAgtgagtattt ... cttaacacagACAAGATTTGAAAGCAAAGAGTGACATGACAGACAATTGACTGATTTTGAA
EST: gi|116394639|gb|EG437231.1|EG437231
EST:     CTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAA                         ACAAGATTTGAAAGCAAAGAGTGACATGACAGACAATTGACTGATTTTGAA
genomic: CTGACCAGCCCTTTTTGGAATATACATCAACCGTGACTGATGTGATTCAAgtgagtattt ... cttaacacagACAAGATTTGAAAGCAAAGAGTGACATGACAGACAATTGACTGATTTTGAA