1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATGGAAAATGTGATGAATACTTACAACGCTAGCCTCACCGCTCCTCCTCCGGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAGgtttggagattttgttgtttttaagctgttctaaattggaatgattaggttggttctccacattattgattgaagtagctctagctcttgtttgcttcttagatcttagtgcacatattaggcttattagaatccaaatctgtcacttgagaactaaaagagcagtgctcttatttttcag
species | Arabidopsis thaliana |
transcript | AT3G54060.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAG GCTTATCTCAGTACAACACACTAAATGGTATGCCAGTATCATTGCTTGGTAEST: gi|116412649|gb|EG455241.1|EG455241
genomic: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAGgtttggagat ... tatttttcagGCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTA
EST: ATCTCTTCTTCAG GCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTAEST: gi|116412627|gb|EG455219.1|EG455219
genomic: ATCTCTTCTTCAGgtttggagat ... tatttttcagGCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTA
EST: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAG GCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTAEST: gi|116412461|gb|EG455053.1|EG455053
genomic: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAGgtttggagat ... tatttttcagGCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTA
EST: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACGGTATCTCTTCTTCAG GCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTAEST: gi|116412561|gb|EG455153.1|EG455153
genomic: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAGgtttggagat ... tatttttcagGCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTA
EST: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAG GCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTAEST: gi|116412605|gb|EG455197.1|EG455197
genomic: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAGgtttggagat ... tatttttcagGCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTA
EST: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAG GCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTAEST: gi|116412638|gb|EG455230.1|EG455230
genomic: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAGgtttggagat ... tatttttcagGCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTA
EST: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGCATCTCTTCTTCAG GCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTAEST: gi|116412616|gb|EG455208.1|EG455208
genomic: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAGgtttggagat ... tatttttcagGCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTA
EST: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAG GCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTAEST: gi|116412483|gb|EG455075.1|EG455075
genomic: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAGgtttggagat ... tatttttcagGCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTA
EST: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAG GCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTAEST: gi|116412538|gb|EG455130.1|EG455130
genomic: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAGgtttggagat ... tatttttcagGCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTA
EST: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAG GCTTATCTCAGTACAACACACTAAATGGTATGCCAGTATCATTGCTTGGTAEST: gi|116412516|gb|EG455108.1|EG455108
genomic: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAGgtttggagat ... tatttttcagGCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTA
EST: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACGGTATCTCTTCTTCAG GCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTAEST: gi|116412549|gb|EG455141.1|EG455141
genomic: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAGgtttggagat ... tatttttcagGCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTA
EST: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAG GCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTAEST: gi|116412472|gb|EG455064.1|EG455064
genomic: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAGgtttggagat ... tatttttcagGCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTA
EST: TTCAGCTCCAACTTCTCAACAGAAAAATCACGGTATCTCTTCTTCAG GCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTAEST: gi|116412505|gb|EG455097.1|EG455097
genomic: TTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAGgtttggagat ... tatttttcagGCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTA
EST: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACGGTATCTCTTCTTCAG GCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTAEST: gi|116412583|gb|EG455175.1|EG455175
genomic: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAGgtttggagat ... tatttttcagGCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTA
EST: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAG GCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTAEST: gi|116412572|gb|EG455164.1|EG455164
genomic: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAGgtttggagat ... tatttttcagGCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTA
EST: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAG GCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTAEST: gi|116412494|gb|EG455086.1|EG455086
genomic: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAGgtttggagat ... tatttttcagGCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTA
EST: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAG GCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTAEST: gi|116412594|gb|EG455186.1|EG455186
genomic: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAGgtttggagat ... tatttttcagGCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTA
EST: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAG GCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTA
genomic: GGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAGgtttggagat ... tatttttcagGCTTATCTCAGTACAACACACTAAATGGTATGTCAGTATCATTGCTTGGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGAAAATGTGATGAATACTTACAACGCTAGCCTCACCGCTCCTCCTCCGGCTTCAGCTCCAACTTCTCAACAGAAAAATCACAGTATCTCTTCTTCAGgtttggagattttgttgtttttaagctgttctaaattggaatgattaggttggttctccacattattgattgaagtagctctagctcttgtttgcttcttagatcttagtgcacatattaggcttattagaatccaaatctgtcacttgagaactaaaagagcagtgctcttatttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC