1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCTTCGACGAGTCAGTCTATAACTGGGAAACGAAAAGGTCCTGAAGTTTCTGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttctgtgcctacatgtttattacatttgatgtagctcttaaactaatattgtgacttttttttttccttggaccag
species | Arabidopsis thaliana |
transcript | AT3G54060.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116412527|gb|EG455119.1|EG455119
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116412649|gb|EG455241.1|EG455241
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116412383|gb|EG454975.1|EG454975
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116412627|gb|EG455219.1|EG455219
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116384859|gb|EG427451.1|EG427451
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116384864|gb|EG427456.1|EG427456
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: AACACGCTCCTCTCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116412461|gb|EG455053.1|EG455053
genomic: AACA-GCTCCTC-CGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116412561|gb|EG455153.1|EG455153
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGATCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116412294|gb|EG454886.1|EG454886
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116412361|gb|EG454953.1|EG454953
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: GGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116412339|gb|EG454931.1|EG454931
genomic: GGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATTTGEST: gi|116385105|gb|EG427697.1|EG427697
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116412605|gb|EG455197.1|EG455197
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116412638|gb|EG455230.1|EG455230
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116412616|gb|EG455208.1|EG455208
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116412483|gb|EG455075.1|EG455075
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116412538|gb|EG455130.1|EG455130
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116412516|gb|EG455108.1|EG455108
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116412549|gb|EG455141.1|EG455141
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGATCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116385102|gb|EG427694.1|EG427694
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116412472|gb|EG455064.1|EG455064
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116412427|gb|EG455019.1|EG455019
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116412505|gb|EG455097.1|EG455097
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116384867|gb|EG427459.1|EG427459
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116412583|gb|EG455175.1|EG455175
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116394638|gb|EG437230.1|EG437230
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116412572|gb|EG455164.1|EG455164
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116412494|gb|EG455086.1|EG455086
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116384869|gb|EG427461.1|EG427461
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116412272|gb|EG454864.1|EG454864
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116412327|gb|EG454919.1|EG454919
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116412594|gb|EG455186.1|EG455186
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116412350|gb|EG454942.1|EG454942
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTG GGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTGEST: gi|116412316|gb|EG454908.1|EG454908
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
EST: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAGCTG GGACTAATAAGTTGCCACAAGCTGATAAAACAGCTAACAATTTCACATCTG
genomic: TGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttct ... cttggaccagGGACTAATAAGTTGCCACAAGCTGATAAAGCAGCTAACAATTTCACATCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTTCGACGAGTCAGTCTATAACTGGGAAACGAAAAGGTCCTGAAGTTTCTGTAACAGCTCCTCCGGTATCTAGGAAATCAAGGATCACTAGAGCAACTGgtatgtttctgtgcctacatgtttattacatttgatgtagctcttaaactaatattgtgacttttttttttccttggaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA