1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgtattcgaattgcttgtttagtcaattgaaaactatctatgggttttgattgtttttcttacatttttgtttttttggggattcattcgcagGTTCCGAATAGTTTGATGACTCTTGATGCTATGTTGAACCATTACGTATCTCTAAAGAAGCAGAAAGTGAGTCTGGATCAAGAGAAACTGAAATTGGATC
species | Arabidopsis thaliana |
transcript | AT3G54060.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTTTAGATCTGAAGCTTCTTCTCTCATCTCTGATTCCCCAATTCGCAAT GTTCCGAATAGTTTGATGACTCTTGATGCTATGTTGAACCATTACGTATCTEST: gi|116412638|gb|EG455230.1|EG455230
genomic: TCTTTAGATCTGAAGCTTCTTCTCTCATCTCTGATTCCCCAATTCGCAATgtatgtattc ... tcattcgcagGTTCCGAATAGTTTGATGACTCTTGATGCTATGTTGAACCATTACGTATCT
EST: TCTTTAGATCTGAAGCTTCTTCTCTCATCTCTGATTCCCCAATTCGCAAT GTTCCGAATAGTTTGATGACTCTTGATGCTATGTTGAACCATTACGTATCTEST: gi|116412483|gb|EG455075.1|EG455075
genomic: TCTTTAGATCTGAAGCTTCTTCTCTCATCTCTGATTCCCCAATTCGCAATgtatgtattc ... tcattcgcagGTTCCGAATAGTTTGATGACTCTTGATGCTATGTTGAACCATTACGTATCT
EST: TCTTTAGATCTGAAGCTTCTTCTCTCATCTCTGATTCCCCAATTCGCAAT GTTCCGAATAGTTTGATGACTCTTGATGCTATGTTGAACCATTACGTATCTEST: gi|116412549|gb|EG455141.1|EG455141
genomic: TCTTTAGATCTGAAGCTTCTTCTCTCATCTCTGATTCCCCAATTCGCAATgtatgtattc ... tcattcgcagGTTCCGAATAGTTTGATGACTCTTGATGCTATGTTGAACCATTACGTATCT
EST: TCTTTAGATCTGAAGCTTCTTCTCTCATCTCCGATTCCCCAATTCGCAAT GTTCCGAATAGTTTGATGACTCTTGATGCTATGTTGAACCATTACGTATCT
genomic: TCTTTAGATCTGAAGCTTCTTCTCTCATCTCTGATTCCCCAATTCGCAATgtatgtattc ... tcattcgcagGTTCCGAATAGTTTGATGACTCTTGATGCTATGTTGAACCATTACGTATCT
tatgggttttgattgtttttcttacatttttgtttttttggggattcattcgcagGTTCCGAATAGTTTGATGACTCTTGATGCTATGTTGAACCATTACGTATCTCTAAAGAAGCAGAAAGTGAGTCTGGATCAAGAGAAACTGAAATTGGATC
ttcttac putative branch site (score: 2)
ttcattc putative PPT
attgtttttcttacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtattcgaattgcttgtttagtcaattgaaaactatctatgggttttgattgtttttcttacatttttgtttttttggggattcattcgcagGTTCCGAATAGTTTGATGACTCTTGATGCTATGTTGAACCATTACGTATCTCTAAAGAAGCAGAAAGTGAGTCTGGATCAAGAGAAACTGAAATTGGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA