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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaaaatgatcaactcaaatccataacattgccttcacgtgtttacaaattaaccatttcattctgctttctctgttggtgttcttctcgaacttttgcaacgcatctgcatgatcacatagcagttagcgtacgcttttctgatattatggtgttgtgtcttgtgttattacagTGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAGGAATTCCTAGTGAAAAACGACGTCTGCACACTCTTGCGCGCATGCCCCC

Basic information

species Arabidopsis thaliana
transcript AT3G51730.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116444084|gb|EG486676.1|EG486676
EST:     TTGAACTGCTTATCAAGGGAAGCAAATCGCTCAAGAACTACGAGAAGAAG                         TGCAAGACGTTGGTGTTTGAATATGGACCCCTGATACTCGTAAATGCAGAG
genomic: TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAGgttaaaatga ... gttattacagTGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
EST: gi|116443061|gb|EG485653.1|EG485653
EST:     TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAG                         TGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
genomic: TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAGgttaaaatga ... gttattacagTGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
EST: gi|301502227|gb|HO207767.1|HO207767
EST:     TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAG                         TGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
genomic: TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAGgttaaaatga ... gttattacagTGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
EST: gi|125292925|gb|EL307010.1|EL307010
EST:     CAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAG                         TGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
genomic: CAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAGgttaaaatga ... gttattacagTGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
EST: gi|116444575|gb|EG487167.1|EG487167
EST:     TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAG                         TGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
genomic: TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAGgttaaaatga ... gttattacagTGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
EST: gi|125077472|gb|EL140251.1|EL140251
EST:     TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAG                         TGCAAGACGTTGGTG
genomic: TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAGgttaaaatga ... gttattacagTGCAAGACGTTGGTG
EST: gi|164093958|gb|ES025748.1|ES025748
EST:     TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAG                         TGCAAGACGTT
genomic: TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAGgttaaaatga ... gttattacagTGCAAGACGTT
EST: gi|164058669|gb|ES158920.1|ES158920
EST:     AGAACTACGAGAAGAAG                         TGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
genomic: AGAACTACGAGAAGAAGgttaaaatga ... gttattacagTGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
EST: gi|124813372|gb|EH898238.1|EH898238
EST:     TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAG                         TGCAAGACGTTGGTGTTTGAATATGGACCTCTGA
genomic: TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAGgttaaaatga ... gttattacagTGCAAGACGTTGGTGTTTGAATATGGACCTCTGA
EST: gi|125196720|gb|EL211674.1|EL211674
EST:     TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAG                         TGCAAGACGTTGGTGTTTGAA
genomic: TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAGgttaaaatga ... gttattacagTGCAAGACGTTGGTGTTTGAA
EST: gi|125299594|gb|EL313679.1|EL313679
EST:     CTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAG                         TGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
genomic: CTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAGgttaaaatga ... gttattacagTGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
EST: gi|124768159|gb|EH858289.1|EH858289
EST:     AACTACGAGAAGAAG                         TGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
genomic: AACTACGAGAAGAAGgttaaaatga ... gttattacagTGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
EST: gi|164114757|gb|ES189898.1|ES189898
EST:     CAAGAACTACGAGAAGAAG                         TGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
genomic: CAAGAACTACGAGAAGAAGgttaaaatga ... gttattacagTGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
EST: gi|164188333|gb|EL983769.1|EL983769
EST:     AAATCGCTCAAGAACTACGAGAAGAAG                         TGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
genomic: AAATCGCTCAAGAACTACGAGAAGAAGgttaaaatga ... gttattacagTGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
EST: gi|86082566|gb|DR378325.1|DR378325
EST:     TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAG                         TGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
genomic: TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAGgttaaaatga ... gttattacagTGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
EST: gi|124726110|gb|EH817512.1|EH817512
EST:     TTGAACTGCTTATCAAGGGATGCAAANCGCTCAAGAACTACGAGAAGAAG                         TGCAAGACGTTGGTGTTTGAATATGGACCTCTGA
genomic: TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAGgttaaaatga ... gttattacagTGCAAGACGTTGGTGTTTGAATATGGACCTCTGA
EST: gi|125294776|gb|EL308861.1|EL308861
EST:     CTCAAGAACTACGAGAAGAAG                         TGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
genomic: CTCAAGAACTACGAGAAGAAGgttaaaatga ... gttattacagTGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
EST: gi|86082778|gb|DR378537.1|DR378537
EST:     TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAG                         TGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
genomic: TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAGgttaaaatga ... gttattacagTGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
EST: gi|116443066|gb|EG485658.1|EG485658
EST:     TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAG                         TGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
genomic: TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAGgttaaaatga ... gttattacagTGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
EST: gi|125268358|gb|EL282443.1|EL282443
EST:     TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAG                         TGCAAGACGTTGG
genomic: TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAGgttaaaatga ... gttattacagTGCAAGACGTTGG
EST: gi|301502871|gb|HO208411.1|HO208411
EST:     TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAG                         TGCAAGACGTTGG
genomic: TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAGgttaaaatga ... gttattacagTGCAAGACGTTGG
EST: gi|47828635|gb|CK118319.1|CK118319
EST:     TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAG                         TGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
genomic: TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAGgttaaaatga ... gttattacagTGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
EST: gi|125304906|gb|EL318991.1|EL318991
EST:     TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAG                         TGCAAGACGTTGGTGTTTGAATATGGACCTCTGAT
genomic: TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAGgttaaaatga ... gttattacagTGCAAGACGTTGGTGTTTGAATATGGACCTCTGAT
EST: gi|47831675|gb|CK121359.1|CK121359
EST:     TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAG                         TGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG
genomic: TTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAGgttaaaatga ... gttattacagTGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcagttagcgtacgcttttctgatattatggtgttgtgtcttgtgttattacagTGCAAGACGTTGGTGTTTGAATATGGACCTCTGATACTCGTAAATGCAGAGGAATTCCTAGTGAAAAACGACGTCTGCACACTCTTGCGCGCATGCCCCC
                  ttctgat  putative branch site (score: 3)
                ttttctgatattat  TA-rich tract