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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATCATGGGTCTTAAAGCTGGAACCTTTGTGCTTCTCTTGTTGGGTTTGATCTTGGTCTCTGACGCTAGATCTTTCGTTGACTCCACCATCTCAGgtaagatattagacaaaatttagaattcatggttgattctagaggcttgctctttaggggtaaagtttgatacttttgatgaaatagtttgttcttatgg...

Basic information

species Arabidopsis thaliana
transcript AT3G51730.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301502451|gb|HO207991.1|HO207991
EST:     TTTGATCTTGGTCTCTGACGCTAGATCTTTCGTTGACTCCACCATCTCAG                         AGAAAGTTTCCAACAAGGAAGACGTTTGCACTCTGTGTGAGGAATATGTTA
genomic: TTTGATCTTGGTCTCTGACGCTAGATCTTTCGTTGACTCCACCATCTCAGgtaagatatt ... gtccgtgtagAGAAAGTTTCCAACAAGGAAGACGTTTGCACTCTGTGTGAGGAATATGTTA
EST: gi|124983973|gb|EL056668.1|EL056668
EST:     CTTTCGTTGACTCCACCATCTCAG                         AGAAAGTTTCCAACAAGGAAGACGTTTGCACTCTGTGTGTAGGAATATGTT
genomic: CTTTCGTTGACTCCACCATCTCAGgtaagatatt ... gtccgtgtagAGAAAGTTTCCAACAAGGAAGACGTTTGCACTCTGTGTG-AGGAATATGTT
EST: gi|301502227|gb|HO207767.1|HO207767
EST:     TTTGATCTTGGTCTCTGACGCTAGATCTTTCGTTGACTCCACCATCTCAG                         AGAAAGTTTCCAACAAGGAAGACGTTTGCACTCTGTGTGAGGAATATGTTA
genomic: TTTGATCTTGGTCTCTGACGCTAGATCTTTCGTTGACTCCACCATCTCAGgtaagatatt ... gtccgtgtagAGAAAGTTTCCAACAAGGAAGACGTTTGCACTCTGTGTGAGGAATATGTTA
EST: gi|116444575|gb|EG487167.1|EG487167
EST:     TTTGATCTTGGTCTCTGACGCTAGATCTTTCGTTGACTCCACCATCTCAG                         AGAAAGTTTCCAACAAGGAAGACGTTTGCACTCTGTGTGAGGAATATGTTA
genomic: TTTGATCTTGGTCTCTGACGCTAGATCTTTCGTTGACTCCACCATCTCAGgtaagatatt ... gtccgtgtagAGAAAGTTTCCAACAAGGAAGACGTTTGCACTCTGTGTGAGGAATATGTTA
EST: gi|124775669|gb|EH865798.1|EH865798
EST:     TCTTTCGTTGACTCCACCATCTCAG                         AGAAAGTTTTCAACAAGGAAGACGTTTGCACTCTGTGTGAGGAATATGTTA
genomic: TCTTTCGTTGACTCCACCATCTCAGgtaagatatt ... gtccgtgtagAGAAAGTTTCCAACAAGGAAGACGTTTGCACTCTGTGTGAGGAATATGTTA
EST: gi|124934862|gb|EL011894.1|EL011894
EST:     TTTGATCTTGGTCTCTGACGCTAGATCTTTCGTTGACTCCACCATCTCAG                         AGAAAGTTTCCAACAAGGAAGACGTTTGCACTCTGT
genomic: TTTGATCTTGGTCTCTGACGCTAGATCTTTCGTTGACTCCACCATCTCAGgtaagatatt ... gtccgtgtagAGAAAGTTTCCAACAAGGAAGACGTTTGCACTCTGT
EST: gi|301502141|gb|HO207681.1|HO207681
EST:     TTTGATCTTGGTCTCTGACGCTAGATCTTTCGTTGACTCCACCATCTCAG                         AGAAAGTTTCCAACAAGGAAGACGTTTGCACTCTGTGTGAGGAATATGTTA
genomic: TTTGATCTTGGTCTCTGACGCTAGATCTTTCGTTGACTCCACCATCTCAGgtaagatatt ... gtccgtgtagAGAAAGTTTCCAACAAGGAAGACGTTTGCACTCTGTGTGAGGAATATGTTA
EST: gi|152035681|gb|BP860832.2|BP860832
EST:     TTGGATCTTGGTCTCTGACGCTAGATCTTTCGTTGACTCCACCATCTCAG                         AGAAAGTTTCCAACAAGGAAGACGTTGGCACTCTGTGTGAGGAATATGTTA
genomic: TTTGATCTTGGTCTCTGACGCTAGATCTTTCGTTGACTCCACCATCTCAGgtaagatatt ... gtccgtgtagAGAAAGTTTCCAACAAGGAAGACGTTTGCACTCTGTGTGAGGAATATGTTA
EST: gi|116443066|gb|EG485658.1|EG485658
EST:     TTTGATCTTGGTCTCTGACGCTAGATCTTTCGTTGACTCCACCATCTCAG                         AGAAAGTTTCCAACAAGGAAGACGTTTGCACTCTGTGTGAGGAATATGTTA
genomic: TTTGATCTTGGTCTCTGACGCTAGATCTTTCGTTGACTCCACCATCTCAGgtaagatatt ... gtccgtgtagAGAAAGTTTCCAACAAGGAAGACGTTTGCACTCTGTGTGAGGAATATGTTA
EST: gi|301502871|gb|HO208411.1|HO208411
EST:     TTTGATCTTGGTCTCTGACGCTAGATCTTTCGTTGACTCCACCATCTCAG                         AGAAAGTTTCCAACAAGGAAGACGTTTGCACTCTGTGTGAGGAATATGTTA
genomic: TTTGATCTTGGTCTCTGACGCTAGATCTTTCGTTGACTCCACCATCTCAGgtaagatatt ... gtccgtgtagAGAAAGTTTCCAACAAGGAAGACGTTTGCACTCTGTGTGAGGAATATGTTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAATCATGGGTCTTAAAGCTGGAACCTTTGTGCTTCTCTTGTTGGGTTTGATCTTGGTCTCTGACGCTAGATCTTTCGTTGACTCCACCATCTCAGgtaagatattagacaaaatttagaattcatggttgattctagaggcttgctctttaggggtaaagtttgatacttttgatgaaatagtttgttcttatgg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgaaa