Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGCAATCGACTCATTCCACGGATCTGCTTACTCATTGATTCTCGATAAATTGTTCTTCTCCCACAGACACCAGATTCTACCAATCATTTGCTCGAAAAGgtaaaatctttctctacaatttcggttgaatcttttgataactcgatatatctcttgtaaagactcttgcttgaatcttctgatctttttttctttatcag

Basic information

species Arabidopsis thaliana
transcript AT3G51730.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124730049|gb|EH821451.1|EH821451
EST:     ACCAATCATTTGCTCGAAAAG                         GAATCATGGGTCTTAAAGCTGGAACCTTTGTGCTTCTCTTGTTGGGTTTGA
genomic: ACCAATCATTTGCTCGAAAAGgtaaaatctt ... tctttatcagGAATCATGGGTCTTAAAGCTGGAACCTTTGTGCTTCTCTTGTTGGGTTTGA
EST: gi|116444575|gb|EG487167.1|EG487167
EST:     ATTTGCTCGAAAAG                         GAATCATGGGTCTTAAAGCTGGAACCTTTGTGCTTCTCTTGTTGGGTTTGA
genomic: ATTTGCTCGAAAAGgtaaaatctt ... tctttatcagGAATCATGGGTCTTAAAGCTGGAACCTTTGTGCTTCTCTTGTTGGGTTTGA
EST: gi|125292282|gb|EL306367.1|EL306367
EST:     ACCAATCATTTGCTCGAAAAG                         GAATCATGGGTCTTAAAGCTGGAACCTTTGTGCTTCTCCTGTTGGGTTTGA
genomic: ACCAATCATTTGCTCGAAAAGgtaaaatctt ... tctttatcagGAATCATGGGTCTTAAAGCTGGAACCTTTGTGCTTCTCTTGTTGGGTTTGA
EST: gi|125269460|gb|EL283545.1|EL283545
EST:     CCAATCATTTGCTCGAAAAG                         GAATCATGGGTCTTAAAGCTGGAACCTTTGTGCTTCTCTTGTTGGGTTTGA
genomic: CCAATCATTTGCTCGAAAAGgtaaaatctt ... tctttatcagGAATCATGGGTCTTAAAGCTGGAACCTTTGTGCTTCTCTTGTTGGGTTTGA
EST: gi|152035681|gb|BP860832.2|BP860832
EST:     AATCATTTGCTCGAAAAG                         GAATCATGGGTCTTAAAGCTGGAACCTTGGTGCTTCTCTTGTGGGGTTGGA
genomic: AATCATTTGCTCGAAAAGgtaaaatctt ... tctttatcagGAATCATGGGTCTTAAAGCTGGAACCTTTGTGCTTCTCTTGTTGGGTTTGA
EST: gi|164163511|gb|EL967766.1|EL967766
EST:     CAGATTCTACCAATCATTTGCTCGAAAAG                         GAATCATGGGTCTTAAAGCTAGGAACCTTTGTGCTTCTCTTGTTGGGTTTG
genomic: CAGATTCTACCAATCATTTGCTCGAAAAGgtaaaatctt ... tctttatcagGAATCATGGGTCTTAAAGCT-GGAACCTTTGTGCTTCTCTTGTTGGGTTTG
EST: gi|116443066|gb|EG485658.1|EG485658
EST:     TTGTTCTTCTCCCACAGACACCAGATTCTACCAATCATTTGCTCGAAAAG                         GAATCATGGGTCTTAAAGCTGGAACCTTTGTGCTTCTCTTGTTGGGTTTGA
genomic: TTGTTCTTCTCCCACAGACACCAGATTCTACCAATCATTTGCTCGAAAAGgtaaaatctt ... tctttatcagGAATCATGGGTCTTAAAGCTGGAACCTTTGTGCTTCTCTTGTTGGGTTTGA
EST: gi|125036619|gb|EL108888.1|EL108888
EST:     ACCAATCATTTGCTCGAAAAG                         GAATCATGGGTCTTAAAGCTGGAACCTTTGTGCTTCTCTTGTTGGGTTTGA
genomic: ACCAATCATTTGCTCGAAAAGgtaaaatctt ... tctttatcagGAATCATGGGTCTTAAAGCTGGAACCTTTGTGCTTCTCTTGTTGGGTTTGA
EST: gi|124824776|gb|EH909642.1|EH909642
EST:     TTCTACCAATCATTTGCTCGAAAAG                         GAATCATGGGTCTTAAAGCTGGAACCTTTGTGCTTCTCTTGTTGGGTTTGA
genomic: TTCTACCAATCATTTGCTCGAAAAGgtaaaatctt ... tctttatcagGAATCATGGGTCTTAAAGCTGGAACCTTTGTGCTTCTCTTGTTGGGTTTGA
EST: gi|125263748|gb|EL277833.1|EL277833
EST:     ACCAATCATTTGCTCGAAAAG                         GAATCATGGGTCTTAAAGCTGGAACCTTTGTGCTTCTCCTGTTGGGTTTGA
genomic: ACCAATCATTTGCTCGAAAAGgtaaaatctt ... tctttatcagGAATCATGGGTCTTAAAGCTGGAACCTTTGTGCTTCTCTTGTTGGGTTTGA