1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tatcagggatctttgtaaacaatcctcgtgaagactttctttctatcttatattgatgatgagttttatatactgactttgttttctcttgattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAG
species | Arabidopsis thaliana |
transcript | AT3G51730.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG CTGGATATCGTTGAACTGCTTATCAAGGGAAGCAAATCGCTCAAGAACTACEST: gi|125293832|gb|EL307917.1|EL307917
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: ACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTEST: gi|116443061|gb|EG485653.1|EG485653
genomic: ACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCT
EST: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACEST: gi|301502451|gb|HO207991.1|HO207991
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAEST: gi|163972738|gb|EL994767.1|EL994767
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTA
EST: CTGTTTCAGGGATTCTCATCAAACTACAAGATCCTGACACACAG CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAAEST: gi|301502227|gb|HO207767.1|HO207767
genomic: CTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAA
EST: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACEST: gi|124756885|gb|EH847015.1|EH847015
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: CAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATACCTGACACACAG CTGGATATCGTEST: gi|124979066|gb|EL052164.1|EL052164
genomic: CAGGACTGTTTCAGAGATTCTCATCAAACTACAAGAT-CCTGACACACAGgttagtgata ... gattatctagCTGGATATCGT
EST: GTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG CTGGATNTCGTTGAACTGCTTATCAAGGGATGCAAEST: gi|116444575|gb|EG487167.1|EG487167
genomic: GTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAA
EST: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACEST: gi|125322700|gb|EL336785.1|EL336785
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: TTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAEST: gi|164175677|gb|ES065150.1|ES065150
genomic: TTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTA
EST: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG CTGGATATCGTTGAACEST: gi|125077472|gb|EL140251.1|EL140251
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAAC
EST: ACAAGATCCTGACACACAG CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACEST: gi|124843429|gb|EH927866.1|EH927866
genomic: ACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: ACAGGACTGTTTCAGAGATTCTCANCAAACTACAAGATCCTGACACACAG CTGGATATCGTTGAACTGCTTAEST: gi|164093958|gb|ES025748.1|ES025748
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTA
EST: CTACAAGATCCTGACACACAG CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACEST: gi|124865490|gb|EH949927.1|EH949927
genomic: CTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG CTGGATATCGTTGEST: gi|124965449|gb|EL039636.1|EL039636
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTG
EST: TCAAACTACAAGATCCTGACACACAG CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACEST: gi|125196720|gb|EL211674.1|EL211674
genomic: TCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: ATCCTGACACACAG CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACEST: gi|124781935|gb|EH871878.1|EH871878
genomic: ATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG CTGGATATCGTTGAACTEST: gi|124900620|gb|EH975238.1|EH975238
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACT
EST: CTCATCAAACTACAAGATCCTGACACACAG CTGGGTATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACEST: gi|125318361|gb|EL332446.1|EL332446
genomic: CTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: CAAACTACAAGATCCTGACACACAG CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACEST: gi|86082566|gb|DR378325.1|DR378325
genomic: CAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACEST: gi|86082778|gb|DR378537.1|DR378537
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACEST: gi|116443066|gb|EG485658.1|EG485658
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACEST: gi|125135988|gb|EL176018.1|EL176018
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG CTGGATATCGTTGAACTGCTTATCAAGGGATGCEST: gi|125268358|gb|EL282443.1|EL282443
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGC
EST: AAACTACAAGATCCTGACACACAG CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACEST: gi|301502871|gb|HO208411.1|HO208411
genomic: AAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACEST: gi|125067656|gb|EL134084.1|EL134084
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGEST: gi|47828635|gb|CK118319.1|CK118319
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCG
EST: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACEST: gi|124713867|gb|EH805269.1|EH805269
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGEST: gi|125131384|gb|EL174043.1|EL174043
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCG
EST: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG CTGGATATCGTTGAEST: gi|47831675|gb|CK121359.1|CK121359
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGA
EST: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACEST: gi|125272661|gb|EL286746.1|EL286746
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG CTGGATATCGTTGAACTGCTTATCAAGGGA
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGA
tcttatattgatgatgagttttatatactgactttgttttctcttgattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAG
ctttgttttctcttg CT-rich tract
atgagttttatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatcagggatctttgtaaacaatcctcgtgaagactttctttctatcttatattgatgatgagttttatatactgactttgttttctcttgattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTACGAGAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - -taaacaa