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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGTAGCTCTTGTCGAAGAAGCTCGTCAGGACAGTTGCGGTGTATGCCACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgataactacaagatcatgactttatctctcttctgtcagtgtatttgtcatttatgcattcagtctcatagactcatagcacctaattaagtca...

Basic information

species Arabidopsis thaliana
transcript AT3G51730.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116444084|gb|EG486676.1|EG486676
EST:     ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG                         CTGGATATCGTTGAACTGCTTATCAAGGGAAGCAAATCGCTCAAGAACTAC
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: gi|125293832|gb|EL307917.1|EL307917
EST:     ACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG                         CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCT
genomic: ACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCT
EST: gi|116443061|gb|EG485653.1|EG485653
EST:     ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG                         CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: gi|301502451|gb|HO207991.1|HO207991
EST:     ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG                         CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTA
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTA
EST: gi|163972738|gb|EL994767.1|EL994767
EST:     CTGTTTCAGGGATTCTCATCAAACTACAAGATCCTGACACACAG                         CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAA
genomic: CTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAA
EST: gi|301502227|gb|HO207767.1|HO207767
EST:     ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG                         CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: gi|124756885|gb|EH847015.1|EH847015
EST:     CAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATACCTGACACACAG                         CTGGATATCGT
genomic: CAGGACTGTTTCAGAGATTCTCATCAAACTACAAGAT-CCTGACACACAGgttagtgata ... gattatctagCTGGATATCGT
EST: gi|124979066|gb|EL052164.1|EL052164
EST:     GTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG                         CTGGATNTCGTTGAACTGCTTATCAAGGGATGCAA
genomic: GTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAA
EST: gi|116444575|gb|EG487167.1|EG487167
EST:     ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG                         CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: gi|125322700|gb|EL336785.1|EL336785
EST:     TTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG                         CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTA
genomic: TTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTA
EST: gi|164175677|gb|ES065150.1|ES065150
EST:     ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG                         CTGGATATCGTTGAAC
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAAC
EST: gi|125077472|gb|EL140251.1|EL140251
EST:     ACAAGATCCTGACACACAG                         CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
genomic: ACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: gi|124843429|gb|EH927866.1|EH927866
EST:     ACAGGACTGTTTCAGAGATTCTCANCAAACTACAAGATCCTGACACACAG                         CTGGATATCGTTGAACTGCTTA
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTA
EST: gi|164093958|gb|ES025748.1|ES025748
EST:     CTACAAGATCCTGACACACAG                         CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
genomic: CTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: gi|124865490|gb|EH949927.1|EH949927
EST:     ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG                         CTGGATATCGTTG
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTG
EST: gi|124965449|gb|EL039636.1|EL039636
EST:     TCAAACTACAAGATCCTGACACACAG                         CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
genomic: TCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: gi|125196720|gb|EL211674.1|EL211674
EST:     ATCCTGACACACAG                         CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
genomic: ATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: gi|124781935|gb|EH871878.1|EH871878
EST:     ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG                         CTGGATATCGTTGAACT
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACT
EST: gi|124900620|gb|EH975238.1|EH975238
EST:     CTCATCAAACTACAAGATCCTGACACACAG                         CTGGGTATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
genomic: CTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: gi|125318361|gb|EL332446.1|EL332446
EST:     CAAACTACAAGATCCTGACACACAG                         CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
genomic: CAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: gi|86082566|gb|DR378325.1|DR378325
EST:     ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG                         CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: gi|86082778|gb|DR378537.1|DR378537
EST:     ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG                         CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: gi|116443066|gb|EG485658.1|EG485658
EST:     ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG                         CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: gi|125135988|gb|EL176018.1|EL176018
EST:     ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG                         CTGGATATCGTTGAACTGCTTATCAAGGGATGC
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGC
EST: gi|125268358|gb|EL282443.1|EL282443
EST:     AAACTACAAGATCCTGACACACAG                         CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
genomic: AAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: gi|301502871|gb|HO208411.1|HO208411
EST:     ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG                         CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: gi|125067656|gb|EL134084.1|EL134084
EST:     ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG                         CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCG
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCG
EST: gi|47828635|gb|CK118319.1|CK118319
EST:     ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG                         CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: gi|124713867|gb|EH805269.1|EH805269
EST:     ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG                         CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCG
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCG
EST: gi|125131384|gb|EL174043.1|EL174043
EST:     ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG                         CTGGATATCGTTGA
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGA
EST: gi|47831675|gb|CK121359.1|CK121359
EST:     ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG                         CTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGATGCAAATCGCTCAAGAACTAC
EST: gi|125272661|gb|EL286746.1|EL286746
EST:     ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAG                         CTGGATATCGTTGAACTGCTTATCAAGGGA
genomic: ACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgata ... gattatctagCTGGATATCGTTGAACTGCTTATCAAGGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGTTGTAGCTCTTGTCGAAGAAGCTCGTCAGGACAGTTGCGGTGTATGCCACAGGACTGTTTCAGAGATTCTCATCAAACTACAAGATCCTGACACACAGgttagtgataactacaagatcatgactttatctctcttctgtcagtgtatttgtcatttatgcattcagtctcatagactcatagcacctaattaagtca

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