1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaatatcagttataagcattttacagaaagccaagtgagtgaaaaatgatttgatgaattctgaaaaatgtgtttgtgtgtggttgtaacattacagGGTGGAGCAACCATAACATGGGATATAGTAGTTGGAGGATGGGATTTAGAGTACAGTGCAGAGTTTGTTCCAAACGCTGAAGAGAGTTACGCGATCGTTG
species | Arabidopsis thaliana |
transcript | AT3G51670.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTCCATCAAGGGTGGTGAGAAAGTTAACATTCAGATTGAAGGCATTGAG GGTGGAGCAACCATAACATGGGATATAGTAGTTGGAGGATGGGATTTAGAGEST: gi|116455406|gb|EG497998.1|EG497998
genomic: TCTCCATCAAGGGTGGTGAGAAAGTTAACATTCAGATTGAAGGCATTGAGgtaatatcag ... aacattacagGGTGGAGCAACCATAACATGGGATATAGTAGTTGGAGGATGGGATTTAGAG
EST: TCTCCATCAAGGGTGGTGAGAAAGTTAACATTCAGATTGAAGGCATTGAG GGTGGAGCAACCATAACATGGGATATAGTAGTTGGAGGATGGGATTTAGAGEST: gi|47832068|gb|CK121752.1|CK121752
genomic: TCTCCATCAAGGGTGGTGAGAAAGTTAACATTCAGATTGAAGGCATTGAGgtaatatcag ... aacattacagGGTGGAGCAACCATAACATGGGATATAGTAGTTGGAGGATGGGATTTAGAG
EST: TCTCCATCAAGGGTGGTGAGAAAGTTAACATTCAGATTGAAGGCATTGAG GGTGGAGCAACCATAACATGGGATATAGTAGTTGGAGGATGGGATTTAGAGEST: gi|116455405|gb|EG497997.1|EG497997
genomic: TCTCCATCAAGGGTGGTGAGAAAGTTAACATTCAGATTGAAGGCATTGAGgtaatatcag ... aacattacagGGTGGAGCAACCATAACATGGGATATAGTAGTTGGAGGATGGGATTTAGAG
EST: TCTCCATCAAGGGTGGTGAGAAAGTTAACATTCAGATTGAAGGCATTGAG GGTGGAGCAACCATAACATGGGATATAGTAGTTGGAGGATGGGATTTAGAGEST: gi|86088003|gb|DR383762.1|DR383762
genomic: TCTCCATCAAGGGTGGTGAGAAAGTTAACATTCAGATTGAAGGCATTGAGgtaatatcag ... aacattacagGGTGGAGCAACCATAACATGGGATATAGTAGTTGGAGGATGGGATTTAGAG
EST: TCTCCATCAAGGGTGGTGAGAAAGTTAACATTCAGATTGAAGGCATTGAG GGTGGAGCAACCATAACATGGGATATAGTAGTTGGAGGATGGGATTTAGAG
genomic: TCTCCATCAAGGGTGGTGAGAAAGTTAACATTCAGATTGAAGGCATTGAGgtaatatcag ... aacattacagGGTGGAGCAACCATAACATGGGATATAGTAGTTGGAGGATGGGATTTAGAG
aaaatgatttgatgaattctgaaaaatgtgtttgtgtgtggttgtaacattacagGGTGGAGCAACCATAACATGGGATATAGTAGTTGGAGGATGGGATTTAGAGTACAGTGCAGAGTTTGTTCCAAACGCTGAAGAGAGTTACGCGATCGTTG
ttgtaac putative branch site (score: 2)
tgaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatcagttataagcattttacagaaagccaagtgagtgaaaaatgatttgatgaattctgaaaaatgtgtttgtgtgtggttgtaacattacagGGTGGAGCAACCATAACATGGGATATAGTAGTTGGAGGATGGGATTTAGAGTACAGTGCAGAGTTTGTTCCAAACGCTGAAGAGAGTTACGCGATCGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA