1 5' 3' | 2 5' 3' | 3 5' 3' |
...attctttgtgtggccgtacaatgaagttattataatcatgtctctattctcgattactacacaaaacattttgatgaatccatttttttcactatttcagATATTCATAAACGTGCCTTGGTACTTCAGTGTGATCTACTCAATGTTCAGCCCATTCCTGACTCAGAGAACAAAGAGCAAGTTTGTGATGTCCAAAGAAG
species | Arabidopsis thaliana |
transcript | AT3G51670.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGATCCTCTCTCTTTTTCAAGATAATTACCCTGAATTGGTTGCTACTAAG ATATTCATAAACGTGCCTTGGTACTTCAGTGTGATCTACTCAATGTTCAGCEST: gi|124774501|gb|EH864630.1|EH864630
genomic: AGATCCTCTCTCTTTTTCAAGATAATTACCCTGAATTGGTTGCTACTAAGgtaaagaaaa ... actatttcagATATTCATAAACGTGCCTTGGTACTTCAGTGTGATCTACTCAATGTTCAGC
EST: AGATCCTCTCTCTTTTTCAAGATAATTACCCTGAATTGGTTGCTACTAAG ATATTCATAAACG
genomic: AGATCCTCTCTCTTTTTCAAGATAATTACCCTGAATTGGTTGCTACTAAGgtaaagaaaa ... actatttcagATATTCATAAACG
attctcgattactacacaaaacattttgatgaatccatttttttcactatttcagATATTCATAAACGTGCCTTGGTACTTCAGTGTGATCTACTCAATGTTCAGCCCATTCCTGACTCAGAGAACAAAGAGCAAGTTTGTGATGTCCAAAGAAG
ttttgat putative branch site (score: 4)
tttttttcactatttc putative PPT
atttttttcactattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attctttgtgtggccgtacaatgaagttattataatcatgtctctattctcgattactacacaaaacattttgatgaatccatttttttcactatttcagATATTCATAAACGTGCCTTGGTACTTCAGTGTGATCTACTCAATGTTCAGCCCATTCCTGACTCAGAGAACAAAGAGCAAGTTTGTGATGTCCAAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - caatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacaaa