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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataacttaaaactctaaccattctattttctttttggcttattttaacctttttggttaaatatatacatatacaattgttgctatttcagGTTCATTAGGCCAGAAGATATTCCGGTGCAATACGGTGGTCTTAGCCGTCCTACTGATTCGCAAAACGGACCGCCAAAACCGGCGTCTGAATTCTCCATC

Basic information

species Arabidopsis thaliana
transcript AT3G51670.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059628|gb|DR355385.1|DR355385
EST:     AGCAAGTTTGTGATGTCCAAAGAAGGCAATGCAGCAGAAACACTCTACAA                         GTTCATTAGGCCAGAAGATATTCCGGTGCAATACGGTGGTCTTAGCCGTCC
genomic: AGCAAGTTTGTGATGTCCAAAGAAGGCAATGCAGCAGAAACACTCTACAAgtataactta ... gctatttcagGTTCATTAGGCCAGAAGATATTCCGGTGCAATACGGTGGTCTTAGCCGTCC
EST: gi|124723419|gb|EH814821.1|EH814821
EST:     AGCAAGTTTGTGATGTCCAAAGAAGGCAATGCAGCAGAAACACTCTACAA                         GTTCATTAGGCCAGAAGATATTCCGGTGCAATACGG
genomic: AGCAAGTTTGTGATGTCCAAAGAAGGCAATGCAGCAGAAACACTCTACAAgtataactta ... gctatttcagGTTCATTAGGCCAGAAGATATTCCGGTGCAATACGG
EST: gi|47832068|gb|CK121752.1|CK121752
EST:     AGCAAGTTTGTGATGTCCAAAGAAGGCAATGCAGCAGAAACACTCTACAA                         GTTCATTAGGCCAGAAGATATTCCGGTGCAATACGGTGGTCTTAGCCGTCC
genomic: AGCAAGTTTGTGATGTCCAAAGAAGGCAATGCAGCAGAAACACTCTACAAgtataactta ... gctatttcagGTTCATTAGGCCAGAAGATATTCCGGTGCAATACGGTGGTCTTAGCCGTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttattttaacctttttggttaaatatatacatatacaattgttgctatttcagGTTCATTAGGCCAGAAGATATTCCGGTGCAATACGGTGGTCTTAGCCGTCCTACTGATTCGCAAAACGGACCGCCAAAACCGGCGTCTGAATTCTCCATC
     ttttaac  putative branch site (score: 2)
                                              ctatttc  putative PPT
             tttttggttaaatata  TA-rich tract