1 5' 3' | 2 5' 3' | 3 5' 3' |
TCAGTGTGATCTACTCAATGTTCAGCCCATTCCTGACTCAGAGAACAAAGAGCAAGTTTGTGATGTCCAAAGAAGGCAATGCAGCAGAAACACTCTACAAgtataacttaaaactctaaccattctattttctttttggcttattttaacctttttggttaaatatatacatatacaattgttgctatttcag
species | Arabidopsis thaliana |
transcript | AT3G51670.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGCAAGTTTGTGATGTCCAAAGAAGGCAATGCAGCAGAAACACTCTACAA GTTCATTAGGCCAGAAGATATTCCGGTGCAATACGGTGGTCTTAGCCGTCCEST: gi|124723419|gb|EH814821.1|EH814821
genomic: AGCAAGTTTGTGATGTCCAAAGAAGGCAATGCAGCAGAAACACTCTACAAgtataactta ... gctatttcagGTTCATTAGGCCAGAAGATATTCCGGTGCAATACGGTGGTCTTAGCCGTCC
EST: AGCAAGTTTGTGATGTCCAAAGAAGGCAATGCAGCAGAAACACTCTACAA GTTCATTAGGCCAGAAGATATTCCGGTGCAATACGGEST: gi|47832068|gb|CK121752.1|CK121752
genomic: AGCAAGTTTGTGATGTCCAAAGAAGGCAATGCAGCAGAAACACTCTACAAgtataactta ... gctatttcagGTTCATTAGGCCAGAAGATATTCCGGTGCAATACGG
EST: AGCAAGTTTGTGATGTCCAAAGAAGGCAATGCAGCAGAAACACTCTACAA GTTCATTAGGCCAGAAGATATTCCGGTGCAATACGGTGGTCTTAGCCGTCC
genomic: AGCAAGTTTGTGATGTCCAAAGAAGGCAATGCAGCAGAAACACTCTACAAgtataactta ... gctatttcagGTTCATTAGGCCAGAAGATATTCCGGTGCAATACGGTGGTCTTAGCCGTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGTGTGATCTACTCAATGTTCAGCCCATTCCTGACTCAGAGAACAAAGAGCAAGTTTGTGATGTCCAAAGAAGGCAATGCAGCAGAAACACTCTACAAgtataacttaaaactctaaccattctattttctttttggcttattttaacctttttggttaaatatatacatatacaattgttgctatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG