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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACTAGAGATGCTTAAGTATATGCGTAAATTCTCTCTGGATGATCAATCTGCTATCCTTCAAAAGgtaaacaaaaacaaaaaaaaaactgtttttacactttttaactaccatgataatattttccattagcatgaacagaaaaagtgttttattatggcttttggtccatcttgcttaccggtaaatgagaaactgtctgagtctagtgaggactgattcatattagattggtctaatattcgttgttcttgtaccaaaacag

Basic information

species Arabidopsis thaliana
transcript AT3G27050.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G27050.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv14s0068g01990.t01 (Vitis vinifera), 5'ss of exon 6
CAACTAGAGATGCTTAAGTATATGCGTAAATTCTCTCTGGATGATCAATCTGCTATCCTTCAAAAGgtaaacaaaaacaaaaaaaaaactgtttttacactttttaactaccatgataatattttccattagcatgaacagaaaaagtgttttattatggcttttggtccatcttgcttaccggtaaatgagaaactgtctgagtctagtgaggactgattcatattagattggtctaatattcgttgttcttgtaccaaaacag
|||||||||||||| ||| | ||||| |||||    ||||||||||||||||  |||||| ||||||||                      | | ||  ||| ||  |   ||| | |||||        ||| | |     |  |   ||||||  ||  || ||   | || |    |                                                                                     
CAACTAGAGATGCTAAAGCACATGCGCAAATTTCACCTGGATGATCAATCTGTAATCCTTGAAAAGgtacctg----------------cctatgtatgcttgttcccccacat-agaatatcagtttgaagcctcagacataggatgattttatcttgatttatgaaacctcatatagaaga----------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125090127|gb|EL148238.1|EL148238
EST:     AGTATATGCGTAAATTCTCTCTGGATGATCAATCTGCTATCCTTCAAAAG                         CTTCAGAAGCAATTAGAAGATGCGGGTTTTGAGCCGGAGGCGT
genomic: AGTATATGCGTAAATTCTCTCTGGATGATCAATCTGCTATCCTTCAAAAGgtaaacaaaa ... accaaaacagCTTCAGAAGCAATTAGAAAATGCGGGTTTTGAGCCGGAGGCGT
EST: gi|164111158|gb|ES189844.1|ES189844
EST:     TTCTCTCTGGATGATCAATCTGCTATCCTTCAAAAG                         CTTCAGAAGCAATTAGAAAATGCGGGTTTTGAGCCGGAGGCGTCTCTTTTG
genomic: TTCTCTCTGGATGATCAATCTGCTATCCTTCAAAAGgtaaacaaaa ... accaaaacagCTTCAGAAGCAATTAGAAAATGCGGGTTTTGAGCCGGAGGCGTCTCTTTTG
EST: gi|125060056|gb|EL128733.1|EL128733
EST:     CGTAAATTCTCTCTGGATGATCAATCTGCTATCCTTCAAAAG                         CTTCAGAAGCAATTAGAAAATGCGGGTTTTGAGCCGGAGGCGTCTCTTTTG
genomic: CGTAAATTCTCTCTGGATGATCAATCTGCTATCCTTCAAAAGgtaaacaaaa ... accaaaacagCTTCAGAAGCAATTAGAAAATGCGGGTTTTGAGCCGGAGGCGTCTCTTTTG