1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAAGCTGTAGCGGTAACAACTGCTATTCAAGAGGAGATATTCTTGGAGATGGGGATTGgtaaagttctctttaaccttttattggttgcttttgagttatacacaccacaccacaccattacatgtttcttactatgaggtatattcgataaaagcag
species | Arabidopsis thaliana |
transcript | AT3G27050.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAACTACTATTCAAGAGGAGATATTCTTGGAGATGGGGATTG ACCCGGGATTTGGTATTGGCTGCTTGGGAAAGCTGAACTCTGCATACGAAAEST: gi|124869761|gb|EH954198.1|EH954198
genomic: CAACTGCTATTCAAGAGGAGATATTCTTGGAGATGGGGATTGgtaaagttct ... ataaaagcagACCCGGGATTTGGTATTGGCTGCTTGGGAAAGCTGAACTCTGCATACGAAA
EST: AGCGGTAACAACTGCTATTCAAGAGGAGATATTCTTGGAGATGGGGATTG ACCCGGGATTTGGTATTGGCTGCTTGGGAAAGCTGAACTEST: gi|124866714|gb|EH951151.1|EH951151
genomic: AGCGGTAACAACTGCTATTCAAGAGGAGATATTCTTGGAGATGGGGATTGgtaaagttct ... ataaaagcagACCCGGGATTTGGTATTGGCTGCTTGGGAAAGCTGAACT
EST: AGGAGATATTCTTGGAGATGGGGATTG ACCCGGGATTTGGTATTGGCTGCTTGGGAAAGCTGAACTCTGCATACGAAA
genomic: AGGAGATATTCTTGGAGATGGGGATTGgtaaagttct ... ataaaagcagACCCGGGATTTGGTATTGGCTGCTTGGGAAAGCTGAACTCTGCATACGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCTGTAGCGGTAACAACTGCTATTCAAGAGGAGATATTCTTGGAGATGGGGATTGgtaaagttctctttaaccttttattggttgcttttgagttatacacaccacaccacaccattacatgtttcttactatgaggtatattcgataaaagcag
- - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - GAGATG